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HGVS Nomenclature
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Ver...@seznam.cz
, …
Johan den Dunnen
4
Aug 29
hgvs
Dear Ivo, you are right, I missed that two different reference sequences were used. Since the
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hgvs
Dear Ivo, you are right, I missed that two different reference sequences were used. Since the
Aug 29
Laura Cobbold
,
Johan den Dunnen
2
Aug 29
Complex inversion nomenclature help
Dear Laura, regarding your question, it seems the format you use to describe the variant is that of
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Complex inversion nomenclature help
Dear Laura, regarding your question, it seems the format you use to describe the variant is that of
Aug 29
Rachel Challis
,
Johan den Dunnen
2
Aug 18
Two variants in cis
Dear Rachel, indeed, following HGVS nomenclature the variant can be described as NM_000527.5:c.[
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Two variants in cis
Dear Rachel, indeed, following HGVS nomenclature the variant can be described as NM_000527.5:c.[
Aug 18
Debbie Travis
, …
Johan den Dunnen
4
Jul 22
IMPORTANT - KMT2A Partial Tandem Duplication (PTD) HGVS nomenclature guidance request from an EQA/PT service provider
Dear Debbie, regarding your questions; > KMT2A PTD (exon 2-10) > c.(?_5' [first] nucleotide
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IMPORTANT - KMT2A Partial Tandem Duplication (PTD) HGVS nomenclature guidance request from an EQA/PT service provider
Dear Debbie, regarding your questions; > KMT2A PTD (exon 2-10) > c.(?_5' [first] nucleotide
Jul 22
Asier Iturrate
,
Johan den Dunnen
2
Jul 22
Question about Alu insertion nomenclature
Dear Asier, an interesting case. I do not think this case, ie multiple exact copies of an inserted
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Question about Alu insertion nomenclature
Dear Asier, an interesting case. I do not think this case, ie multiple exact copies of an inserted
Jul 22
David
,
Johan den Dunnen
3
Jul 17
Protein nomenclature for insertions that encode a translation stop codon
Dear Johan, I hope this message finds you well. I would like to follow up on the question I raised in
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Protein nomenclature for insertions that encode a translation stop codon
Dear Johan, I hope this message finds you well. I would like to follow up on the question I raised in
Jul 17
José María García-Aznar Navajas
,
Johan den Dunnen
2
Jun 8
Consult about nomenclature for 3'rule
Dear José Maria, a correct description of the variant you mention is NC_000016.10:g.
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Consult about nomenclature for 3'rule
Dear José Maria, a correct description of the variant you mention is NC_000016.10:g.
Jun 8
Motahareh Jadidi
, …
i.f.a.c...@lumc.nl
5
Jun 3
Question Regarding the Reporting of A Novel 7-Base-Pair Deletion
Dear Motahahreh, Your first email had been answered on the Google Group. I see you didn't get a
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Question Regarding the Reporting of A Novel 7-Base-Pair Deletion
Dear Motahahreh, Your first email had been answered on the Google Group. I see you didn't get a
Jun 3
Scott McMahan
,
I.F.A.C...@lumc.nl
2
May 15
insX or insXaa?
Dear Scott, Sorry for the late reply, we overlooked your email. Indeed, "Xaa" is preferred.
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insX or insXaa?
Dear Scott, Sorry for the late reply, we overlooked your email. Indeed, "Xaa" is preferred.
May 15
Maida Ljubijankic
,
Johan den Dunnen
2
May 15
Rejected proposal SVD WG010
Dear Maida, indeed, proposal SVD-WG010 has been rejected which means that the recommendations stay
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Rejected proposal SVD WG010
Dear Maida, indeed, proposal SVD-WG010 has been rejected which means that the recommendations stay
May 15
Aneta Molenda
,
Johan den Dunnen
2
May 1
A few changes after deleted nucleotide
Dear Aneta, following current HGVS nomenclature the variant you give CCGGTCCTCCCCCCAGGCGCCCCGAAG to
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A few changes after deleted nucleotide
Dear Aneta, following current HGVS nomenclature the variant you give CCGGTCCTCCCCCCAGGCGCCCCGAAG to
May 1
Hafiz Muhammad Jafar Hussain
,
Johan den Dunnen
2
May 1
Nomenclature for C19orf44 variants
Dear hafizaasi19, You can check whether variant descriptions follow HGVS nomenclature using freely
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Nomenclature for C19orf44 variants
Dear hafizaasi19, You can check whether variant descriptions follow HGVS nomenclature using freely
May 1
Dr. Raina Yamamoto
,
Johan den Dunnen
2
Apr 16
Nomenclature r. p.
Dear Raina, please note, you do not mention the reference sequence used. I guess it may be NM_000088.
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Nomenclature r. p.
Dear Raina, please note, you do not mention the reference sequence used. I guess it may be NM_000088.
Apr 16
Razan Abu Khashabeh
, …
Johan den Dunnen
4
Apr 16
Nonsense vs Stop-gain Variants
Dear Scott, thanks for the info. However, as said, HGVS nomenclature does not use the term "stop
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Nonsense vs Stop-gain Variants
Dear Scott, thanks for the info. However, as said, HGVS nomenclature does not use the term "stop
Apr 16
Claudio Paolicelli
,
Johan den Dunnen
2
Apr 7
Description MLPA deletion
Dear Claudio, regarding your question, "About deletion Exon30-36 of DMD gene, is correct the
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Description MLPA deletion
Dear Claudio, regarding your question, "About deletion Exon30-36 of DMD gene, is correct the
Apr 7
aftab ahmad
,
Johan den Dunnen
2
Apr 7
HGVS nomenclature
Dear Aftab, I am not sure what you mean with "please send me HGVS nomenclature".
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HGVS nomenclature
Dear Aftab, I am not sure what you mean with "please send me HGVS nomenclature".
Apr 7
Voesenek, Krysta
, …
Reece Hart
10
Mar 24
new website hgvs-nomenclature.org cannot be opened from university network due to misconfiguration of the domain DNS security
Excellent. Thanks for confirming, Krysta. -Reece On Monday, March 24, 2025 at 4:00:00 AM UTC-7
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new website hgvs-nomenclature.org cannot be opened from university network due to misconfiguration of the domain DNS security
Excellent. Thanks for confirming, Krysta. -Reece On Monday, March 24, 2025 at 4:00:00 AM UTC-7
Mar 24
James Polke
,
Johan den Dunnen
2
Mar 12
Mailing list for HGVS updates/announcements
Dear James, the HGVS nomenclature Home page has a link ("Join the HGVS Nomenclature
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Mailing list for HGVS updates/announcements
Dear James, the HGVS nomenclature Home page has a link ("Join the HGVS Nomenclature
Mar 12
Aneta Molenda
,
Johan den Dunnen
2
Mar 12
Complex variants with large deletions/large duplications/insertions/inversions on one allele
Dear Aneta, regarding your question reporting the variant as NC_000015.10:g.37228213_37357632delins[
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Complex variants with large deletions/large duplications/insertions/inversions on one allele
Dear Aneta, regarding your question reporting the variant as NC_000015.10:g.37228213_37357632delins[
Mar 12
Steven Cordes
,
Johan den Dunnen
2
Mar 9
Reporting imprecise repeat expansion variants
Dear Steven, at the moment I am writing this reply, I could not access the NG_009378.1 reference
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Reporting imprecise repeat expansion variants
Dear Steven, at the moment I am writing this reply, I could not access the NG_009378.1 reference
Mar 9
Claudia Pinato
,
Johan den Dunnen
2
Mar 9
description of a triplication
Dear Claudia, yes, following current recommendations, you should also indicate you detected 4 copies.
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description of a triplication
Dear Claudia, yes, following current recommendations, you should also indicate you detected 4 copies.
Mar 9
Ligia Raquel Lameiras
,
Johan den Dunnen
2
Mar 9
Clarification on Reporting COL1A1 Variants
Dear Ligia, a difficult case which shows the limitations of HGVS nomenclature, ie for complex
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Clarification on Reporting COL1A1 Variants
Dear Ligia, a difficult case which shows the limitations of HGVS nomenclature, ie for complex
Mar 9
Kristina Aleknavičienė
,
Johan den Dunnen
2
Mar 9
Question about DMPK mosaicism
Dear Kristina, following current recommendations, the correct description is NM_004409.5:c.*224_*
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Question about DMPK mosaicism
Dear Kristina, following current recommendations, the correct description is NM_004409.5:c.*224_*
Mar 9
Jianhua Zhao
,
Johan den Dunnen
2
Feb 24
Prioritization rules
Dear Jianhua, regarding your question, since a deletion-insterion variant ("delins") is a
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Prioritization rules
Dear Jianhua, regarding your question, since a deletion-insterion variant ("delins") is a
Feb 24
Jianhua Zhao
,
Johan den Dunnen
2
Feb 24
Propose additional exception
Dear Jianhua, unfortunately, to answer your question correctly, essential information is missing, you
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Propose additional exception
Dear Jianhua, unfortunately, to answer your question correctly, essential information is missing, you
Feb 24
Sarantaus, Laura X
, …
Johan den Dunnen
3
Feb 7
Question related to CNV nomenclature using seq[GRCh37]
Dear Laura, in addition to the reply above, please note the description NC_000015.9:g.
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Question related to CNV nomenclature using seq[GRCh37]
Dear Laura, in addition to the reply above, please note the description NC_000015.9:g.
Feb 7
David W. Hein
,
Johan den Dunnen
2
Feb 7
Defining reference alleles as "normal" or "normal function" alleles
Dear David, HGVS nomenclature is a standard to describe variants in DNA, RNA and protein sequences.
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Defining reference alleles as "normal" or "normal function" alleles
Dear David, HGVS nomenclature is a standard to describe variants in DNA, RNA and protein sequences.
Feb 7
Thaís Córdova
,
Johan den Dunnen
2
Feb 7
Between-aminoacids deletion
Dear Thais, the predicted consequences of variant NC_000020.11:g.54172931_54172933del NM_000782.5:c.
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Between-aminoacids deletion
Dear Thais, the predicted consequences of variant NC_000020.11:g.54172931_54172933del NM_000782.5:c.
Feb 7
Richard Wong
,
Johan den Dunnen
3
Jan 30
Repeated Sequences vs Duplication calling
Hello Johan, Thank you for taking the time to answer my question. I appreciate your advice on this
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Repeated Sequences vs Duplication calling
Hello Johan, Thank you for taking the time to answer my question. I appreciate your advice on this
Jan 30
archana krishna
,
Johan den Dunnen
2
Jan 17
CONVERTION OF GV information to mutaed sequence
Dear Archana, sorry, but I do not understand your question. What is "GV", what do you mean
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CONVERTION OF GV information to mutaed sequence
Dear Archana, sorry, but I do not understand your question. What is "GV", what do you mean
Jan 17