compilation hermes-tutorial with hermes 2.0 on ubuntu 13.04 32bit

[Tomas Svaton]

Hello everybody,

I am trying to compile the hermes-tutorial. My CMake.vars is (I removed trilinos as I did not use it during hermes compilation):

tomas@tomas-VirtualBox:~/workspace/hermes-tutorial$ more CMake.vars

# This is a sample CMake.vars file for Hermes.

# Some search paths.

if (WIN32)

  set(GLUT_ROOT "d:/hpfem/hermes/dependencies/glut")

  set(GLEW_ROOT "d:/hpfem/hermes/dependencies/glew")

  set(PTHREAD_ROOT "d:/hpfem/hermes/dependencies/pthread")

  set(UMFPACK_ROOT "d:/hpfem/hermes/dependencies/umfpack")

  set(CLAPACK_ROOT "d:/hpfem/hermes/dependencies/clapack")

  # Target (installation) path.

  set(TARGET_ROOT "d:/hpfem/hermes/dependencies")

else()

  #set(GLUT_ROOT "/usr/lib/")

  #set(GLEW_ROOT "/usr/lib/")

  #set(PTHREAD_ROOT "/usr/lib/")

  #set(UMFPACK_ROOT "/usr/lib/")

  #set(CLAPACK_ROOT "/usr/lib/")

endif()

# Python.

set(WITH_PYTHON NO)

# Trilinos

if (WIN32) 

  set(TRILINOS_ROOT "d:/hpfem/hermes/dependencies/trilinos")

else() 

  set(TRILINOS_ROOT "~/solvers/trilinos")

endif()

SET(WITH_TRILINOS NO)

# Experimental

# Turn on Zoltan AND MPI

SET(WITH_ZOLTAN YES)

SET(WITH_MPI YES)

tomas@tomas-VirtualBox:~/workspace/hermes-tutorial$

Then I followed with

cmake .

make

and the compilation breaks on 87%

Could someone give me the hint what could be wrong? 

Thanks in advance.

Tomas.

The terminal output:

tomas@tomas-VirtualBox:~/workspace/hermes-tutorial$ cmake .

-- Configuring done

-- Generating done

-- Build files have been written to: /home/tomas/workspace/hermes-tutorial

tomas@tomas-VirtualBox:~/workspace/hermes-tutorial$ make

[  1%] Building CXX object A-linear/01-mesh/CMakeFiles/A-01-mesh.dir/main.cpp.o

Linking CXX executable A-01-mesh

[  1%] Built target A-01-mesh

[  3%] Building CXX object A-linear/02-space/CMakeFiles/A-02-space.dir/main.cpp.o

Linking CXX executable A-02-space

[  3%] Built target A-02-space

[  5%] Building CXX object A-linear/03-poisson/CMakeFiles/A-03-poisson.dir/definitions.cpp.o

[  7%] Building CXX object A-linear/03-poisson/CMakeFiles/A-03-poisson.dir/main.cpp.o

Linking CXX executable A-03-poisson

[  7%] Built target A-03-poisson

[  9%] Building CXX object A-linear/04-bc-dirichlet/CMakeFiles/A-04-bc-dirichlet.dir/definitions.cpp.o

[ 11%] Building CXX object A-linear/04-bc-dirichlet/CMakeFiles/A-04-bc-dirichlet.dir/main.cpp.o

Linking CXX executable A-04-bc-dirichlet

...

[ 83%] Building CXX object D-adaptivity/10-transient-space-and-time/CMakeFiles/D-10-transient-space-and-time.dir/main.cpp.o

[ 84%] Building CXX object D-adaptivity/10-transient-space-and-time/CMakeFiles/D-10-transient-space-and-time.dir/definitions.cpp.o

Linking CXX executable D-10-transient-space-and-time

[ 84%] Built target D-10-transient-space-and-time

[ 86%] Building CXX object E-fvm-and-dg/01-linear-advection-dg/CMakeFiles/E-01-linear-advection-dg.dir/main.cpp.o

In file included from /home/tomas/workspace/hermes-tutorial/E-fvm-and-dg/01-linear-advection-dg/main.cpp:44:0:

/home/tomas/workspace/hermes-tutorial/E-fvm-and-dg/01-linear-advection-dg/euler_util.cpp: In member function ‘void KrivodonovaDiscontinuityDetector::calculate_jumps(Hermes::Hermes2D::Element*, int, double*)’:

/home/tomas/workspace/hermes-tutorial/E-fvm-and-dg/01-linear-advection-dg/euler_util.cpp:187:66: error: ‘class Hermes::Hermes2D::DiscontinuousFunc<double>’ has no member named ‘get_val_central’

/home/tomas/workspace/hermes-tutorial/E-fvm-and-dg/01-linear-advection-dg/euler_util.cpp:187:115: error: ‘class Hermes::Hermes2D::DiscontinuousFunc<double>’ has no member named ‘get_val_neighbor’

/home/tomas/workspace/hermes-tutorial/E-fvm-and-dg/01-linear-advection-dg/euler_util.cpp:188:72: error: ‘class Hermes::Hermes2D::DiscontinuousFunc<double>’ has no member named ‘get_val_central’

/home/tomas/workspace/hermes-tutorial/E-fvm-and-dg/01-linear-advection-dg/euler_util.cpp:188:127: error: ‘class Hermes::Hermes2D::DiscontinuousFunc<double>’ has no member named ‘get_val_neighbor’

/home/tomas/workspace/hermes-tutorial/E-fvm-and-dg/01-linear-advection-dg/euler_util.cpp:189:72: error: ‘class Hermes::Hermes2D::DiscontinuousFunc<double>’ has no member named ‘get_val_central’

/home/tomas/workspace/hermes-tutorial/E-fvm-and-dg/01-linear-advection-dg/euler_util.cpp:189:127: error: ‘class Hermes::Hermes2D::DiscontinuousFunc<double>’ has no member named ‘get_val_neighbor’

/home/tomas/workspace/hermes-tutorial/E-fvm-and-dg/01-linear-advection-dg/euler_util.cpp:190:65: error: ‘class Hermes::Hermes2D::DiscontinuousFunc<double>’ has no member named ‘get_val_central’

/home/tomas/workspace/hermes-tutorial/E-fvm-and-dg/01-linear-advection-dg/euler_util.cpp:190:113: error: ‘class Hermes::Hermes2D::DiscontinuousFunc<double>’ has no member named ‘get_val_neighbor’

make[2]: *** [E-fvm-and-dg/01-linear-advection-dg/CMakeFiles/E-01-linear-advection-dg.dir/main.cpp.o] Error 1

make[1]: *** [E-fvm-and-dg/01-linear-advection-dg/CMakeFiles/E-01-linear-advection-dg.dir/all] Error 2

make: *** [all] Error 2

tomas@tomas-VirtualBox:~/workspace/hermes-tutorial$

[Lukas Korous]

Hello Tomas,

this looks as a problem on our side. Let me fix that and get back to
you tomorrow.

Thanks,
Regards,
Lukas Korous

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Lukáš Korous

[Lukas Korous]

Hi Tomas,

I fixed that in the commit:

https://github.com/hpfem/hermes-tutorial/commit/3736fcc4343bb9286cb5f7050f391e6a2d3bfa41
Fixes of versions (some devel features were in master).

The reason was that some devel features were in master.

Best Regards,
Lukas Korous

--
Lukáš Korous

[Tomas Svaton]

Hi Lukas,

thank you very much, it works well now.

Just one note. I looked for compile also hermes-examples, but I do not know how to set CMake.vars. "cmake ." fails also for the default configuration. I am sorry maybe for these simple issue, but I am not so experinced.

Could you see for this task please?

Thank you in advance.

Best regards, Tomas.

[Lukas Korous]

Could you please send me the cmake output (from the console)?

Thanks,
Lukas

[Tomas Svaton]

Hi Lukas,

This is output (without any CMake.vars) of my cmake .

tomas@tomas-VirtualBox:~/workspace/hermes-examples$ cmake .

CMake Error at /usr/share/cmake-2.8/Modules/CMakeCXXInformation.cmake:91 (include):

  include could not find load file:

    /home/tomas/workspace/hermes-examples/cmake/cxx_flag_overrides.cmake

Call Stack (most recent call first):

  CMakeLists.txt:2 (project)

-- Configuring incomplete, errors occurred!

tomas@tomas-VirtualBox:~/workspace/hermes-examples$ 

and this with the CMake.vars

tomas@tomas-VirtualBox:~/workspace/hermes-examples$ cmake .

CMake Error at /usr/share/cmake-2.8/Modules/CMakeCXXInformation.cmake:91 (include):

  include could not find load file:

    /home/tomas/workspace/hermes-examples/cmake/cxx_flag_overrides.cmake

Call Stack (most recent call first):

  CMakeLists.txt:2 (project)

-- Configuring incomplete, errors occurred!

tomas@tomas-VirtualBox:~/workspace/hermes-examples$ 

the content of the CMake.vars is

# Some search paths.

if (WIN32)

  # Root of a directory with dependecies. This line has to be modified. Don't forget to replace all backslashes '\' with slashes '/'.

  SET(DEP_ROOT "d:/hpfem/hermes/dependencies")

else()

  SET(DEP_ROOT "/usr")

endif()

#PTHREAD

SET(PTHREAD_ROOT ${DEP_ROOT})

#HERMES

SET(HERMES_DIRECTORY "${DEP_ROOT}/lib")

SET(HERMES_INCLUDE_PATH "${DEP_ROOT}/include")

# Trilinos

 SET(WITH_TRILINOS NO)

# set(TRILINOS_ROOT ${DEP_ROOT})

# Turn on Zoltan AND MPI

SET(WITH_ZOLTAN YES)

SET(WITH_MPI YES)

Hope this helps.

Thanks.

Tomas.

[Lukas Korous]

Hi Tomas,

yes, that was another bug from non-uniformly done things in the repositories.

My apologies, it should work now.
Regards,
Lukas

[Tomas Svaton]

Hi Lukas,

Thank you very much. It works well now.

Best regards, Tomas.