Can't install HDDM on Win10 or Mac

Renzo Lanfranco

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Feb 22, 2022, 8:45:39 AM2/22/22

to hddm-users

Hi. First, I want to say that I have no experience using Python - this is my first time. I have been following different instructions about how to install HDDM (including the instructions on the official website but they don't work), but none of them work. I'm trying to install it on a WIN10 PC and on a Mac to use it wherever it works first, but so far it doesn't work in either. Both environments give me the same error messages.

After having installed Anaconda, etc., when I input

conda install -c pymc hddm

I get this:

(base) C:\>conda install -c pymc hddm
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: -
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed

UnsatisfiableError: The following specifications were found
to be incompatible with the existing python installation in your environment:

Specifications:

- hddm -> python[version='2.7.*|3.5.*']

Your python: python=3.9

If python is on the left-most side of the chain, that's the version you've asked for.
When python appears to the right, that indicates that the thing on the left is somehow
not available for the python version you are constrained to. Note that conda will not
change your python version to a different minor version unless you explicitly specify
that.

Is it really just the Python version?

Also, of these commands:

pip install cython pip install pymc pip install git+https://github.com/hddm-devs/kabuki pip install git+https://github.com/hddm-devs/hddm # Optional pip install torch torchvision torchaudio

...only pip install cython works. What should I do? Thanks.

Best,

Renzo

Serena Gu

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Feb 24, 2022, 11:18:35 AM2/24/22

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Hi! I am having the same issue here. I also tried to download the older version of python 3.5 and downloaded the corresponding pymc package, only to find out that I could not find the right version of hddm model to work with.

Alexander Fengler

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Mar 6, 2022, 9:16:06 PM3/6/22

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Try using python 3.7 and just type 'pip install git+https://github.com/hddm-devs/hddm'.

Let me know if this doesn't work and if so what the error is.

Best,

Alex

Sean van Mil

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Jan 3, 2023, 10:23:36 AM1/3/23

to hddm-users

Hi Alex, and others that might know the answer by this point,

I'm new to the HDDM toolkit, and was trying to install it in using Jupyter Notebook in Ancadona, so far without success. I read through some of the threads, and this one best describes my problem. However, I can't seem to read what solved it in the end. I created an environment with Python version 3.7. I think I succeed in running the 'pip install pymc==2.3.8', and when running the 'pip install git+https://github.com/hddm-devs/kabuki' it also runs except for one red block of output saying: Running command git clone --filter=blob:none --quiet https://github.com/hddm-devs/kabuki 'C:\Users\seanv\AppData\Local\Temp\pip-req-build-w0rrwhmc'.

However, when running the line of code installing hddm (pip install git+https://github.com/hddm-devs/hddm), I get a long error output stating the below...

Let me know what you think, and thank you in advance!

Best,

Sean

Error code:

Running command git clone --filter=blob:none --quiet https://github.com/hddm-devs/hddm 'C:\Users\seanv\AppData\Local\Temp\pip-req-build-4_70f1h9' Running command git submodule update --init --recursive -q error: subprocess-exited-with-error

python setup.py egg_info did not run successfully. exit code: 1

[93 lines of output] Compiling src/wfpt.pyx because it changed. Compiling src/cdfdif_wrapper.pyx because it changed. Compiling src/cddm_data_simulation.pyx because it changed. [1/3] Cythonizing src/cddm_data_simulation.pyx [2/3] Cythonizing src/cdfdif_wrapper.pyx [3/3] Cythonizing src/wfpt.pyx error: subprocess-exited-with-error Getting requirements to build wheel did not run successfully. exit code: 1

[37 lines of output] reading from setup.cfg... HDF5_DIR environment variable not set, checking some standard locations .. checking C:\Users\seanv\anaconda3\envs\conda_hddm\include ...

hdf5 headers not found in C:\Users\seanv\anaconda3\envs\conda_hddm\include checking C:\Users\seanv\anaconda3\envs\conda_hddm\Library\include ... hdf5 headers not found in C:\Users\seanv\anaconda3\envs\conda_hddm\Library\include checking C:\Users\seanv\include ... hdf5 headers not found in C:\Users\seanv\include checking /usr/local\include ... hdf5 headers not found in /usr/local\include checking /sw\include ... hdf5 headers not found in /sw\include checking /opt\include ... hdf5 headers not found in /opt\include checking /opt/local\include ... hdf5 headers not found in /opt/local\include checking /opt/homebrew\include ... hdf5 headers not found in /opt/homebrew\include checking /usr\include ... hdf5 headers not found in /usr\include Traceback (most recent call last): File "C:\Users\seanv\anaconda3\envs\conda_hddm\lib\site-packages\pip\_vendor\pep517\in_process\_in_process.py", line 351, in <module> main() File "C:\Users\seanv\anaconda3\envs\conda_hddm\lib\site-packages\pip\_vendor\pep517\in_process\_in_process.py", line 333, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "C:\Users\seanv\anaconda3\envs\conda_hddm\lib\site-packages\pip\_vendor\pep517\in_process\_in_process.py", line 118, in get_requires_for_build_wheel return hook(config_settings) File "C:\Users\seanv\AppData\Local\Temp\pip-build-env-4r40_7qp\overlay\Lib\site-packages\setuptools\build_meta.py", line 338, in get_requires_for_build_wheel return self._get_build_requires(config_settings, requirements=['wheel']) File "C:\Users\seanv\AppData\Local\Temp\pip-build-env-4r40_7qp\overlay\Lib\site-packages\setuptools\build_meta.py", line 320, in _get_build_requires self.run_setup() File "C:\Users\seanv\AppData\Local\Temp\pip-build-env-4r40_7qp\overlay\Lib\site-packages\setuptools\build_meta.py", line 335, in run_setup exec(code, locals()) File "<string>", line 449, in <module> File "<string>", line 390, in _populate_hdf5_info ValueError: did not find HDF5 headers [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error Getting requirements to build wheel did not run successfully. exit code: 1 See above for output. note: This error originates from a subprocess, and is likely not a problem with pip. C:\Users\seanv\anaconda3\envs\conda_hddm\lib\site-packages\setuptools\installer.py:30: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. SetuptoolsDeprecationWarning, Traceback (most recent call last): File "C:\Users\seanv\anaconda3\envs\conda_hddm\lib\site-packages\setuptools\installer.py", line 82, in fetch_build_egg subprocess.check_call(cmd) File "C:\Users\seanv\anaconda3\envs\conda_hddm\lib\subprocess.py", line 363, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['C:\\Users\\seanv\\anaconda3\\envs\\conda_hddm\\python.exe', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', 'C:\\Users\\seanv\\AppData\\Local\\Temp\\tmpm8cp4gr5', '--quiet', 'netcdf4']' returned non-zero exit status 1.

The above exception was the direct cause of the following exception:

Traceback (most recent call last): File "<string>", line 36, in <module> File "<pip-setuptools-caller>", line 34, in <module> File "C:\Users\seanv\AppData\Local\Temp\pip-req-build-4_70f1h9\setup.py", line 41, in <module> ext_modules = ext_modules File "C:\Users\seanv\anaconda3\envs\conda_hddm\lib\site-packages\setuptools\__init__.py", line 86, in setup _install_setup_requires(attrs) File "C:\Users\seanv\anaconda3\envs\conda_hddm\lib\site-packages\setuptools\__init__.py", line 80, in _install_setup_requires dist.fetch_build_eggs(dist.setup_requires) File "C:\Users\seanv\anaconda3\envs\conda_hddm\lib\site-packages\setuptools\dist.py", line 878, in fetch_build_eggs replace_conflicting=True, File "C:\Users\seanv\anaconda3\envs\conda_hddm\lib\site-packages\pkg_resources\__init__.py", line 791, in resolve replace_conflicting=replace_conflicting File "C:\Users\seanv\anaconda3\envs\conda_hddm\lib\site-packages\pkg_resources\__init__.py", line 1075, in best_match return self.obtain(req, installer) File "C:\Users\seanv\anaconda3\envs\conda_hddm\lib\site-packages\pkg_resources\__init__.py", line 1087, in obtain return installer(requirement) File "C:\Users\seanv\anaconda3\envs\conda_hddm\lib\site-packages\setuptools\dist.py", line 945, in fetch_build_egg return fetch_build_egg(self, req) File "C:\Users\seanv\anaconda3\envs\conda_hddm\lib\site-packages\setuptools\installer.py", line 84, in fetch_build_egg raise DistutilsError(str(e)) from e distutils.errors.DistutilsError: Command '['C:\\Users\\seanv\\anaconda3\\envs\\conda_hddm\\python.exe', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', 'C:\\Users\\seanv\\AppData\\Local\\Temp\\tmpm8cp4gr5', '--quiet', 'netcdf4']' returned non-zero exit status 1.

[end of output] note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed Encountered error while generating package metadata.

See above for output.

note: This is an issue with the package mentioned above, not pip. hint: See above for details.

Op maandag 7 maart 2022 om 03:16:06 UTC+1 schreef alexande...@brown.edu:

Message has been deleted

Leyla

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Jan 4, 2023, 11:54:04 AM1/4/23

to hddm-users

Hi,

Have you resolved this? I also get a really long error (cf. below) when attempting a git clone (using a python 3.7 environment).

If anyone has any pointers, that would be great.

Thank you.

Collecting git+https://github.com/hddm-devs/hddm
Cloning https://github.com/hddm-devs/hddm to /private/var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/pip-req-build-n6q7vab3
Running command git clone --filter=blob:none --quiet https://github.com/hddm-devs/hddm /private/var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/pip-req-build-n6q7vab3
Resolved https://github.com/hddm-devs/hddm to commit a0d9dba42b22404a10068ad67aec4061132c369e

Running command git submodule update --init --recursive -q

Preparing metadata (setup.py) ... error

error: subprocess-exited-with-error

× python setup.py egg_info did not run successfully.
│ exit code: 1

╰─> [1100 lines of output]
error: subprocess-exited-with-error

× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [1057 lines of output]
running bdist_wheel
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "pymc.flib" sources
f2py options: ['skip:ppnd7']
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/fortranobject.c' to sources.
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc' to include_dirs.
adding 'build/src.macosx-10.9-x86_64-3.7/pymc/flib-f2pywrappers.f' to sources.
building extension "pymc.LazyFunction" sources
building extension "pymc.Container_values" sources
building extension "pymc.gp.linalg_utils" sources
f2py options: []
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp/fortranobject.c' to sources.
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp' to include_dirs.
building extension "pymc.gp.incomplete_chol" sources
f2py options: []
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp/fortranobject.c' to sources.
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp' to include_dirs.
building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources
f2py options: []
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp/cov_funs/fortranobject.c' to sources.
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp/cov_funs' to include_dirs.
adding 'build/src.macosx-10.9-x86_64-3.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources.
building extension "pymc.gp.cov_funs.distances" sources
f2py options: []
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp/cov_funs/fortranobject.c' to sources.
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp/cov_funs' to include_dirs.
build_src: building npy-pkg config files
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
setuptools.SetuptoolsDeprecationWarning,
running build_py
creating build/lib.macosx-10.9-x86_64-cpython-37
creating build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/StepMethods.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/InstantiationDecorators.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/CircularStochastic.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/diagnostics.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/threadpool.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/graph.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/Matplot.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/Container.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/Model.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/distributions.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/MCMC.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/datatypes.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/NormalApproximation.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/progressbar.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/utils.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/PyMCObjects.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/six.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/Node.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/CommonDeterministics.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/calc_utils.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/NumpyDeterministics.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/ScipyDistributions.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/decorators.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
creating build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/no_trace.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/txt.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/hdf5.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/sqlite.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/pickle.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/hdf5ea.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/ram.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/base.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
creating build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/melanoma.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/disaster_model_linear.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/disaster_model.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/disaster_model_gof.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/gelman_bioassay.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/weibull_fit_gof.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/melanoma_data.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/disaster_model_null.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/zip.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/custom_step.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/disaster_model_missing.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/weibull_fit.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
creating build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/covparams.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/observation.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/PyMCmodel.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/basiscov.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/realizations.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/mesh_choice.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/cov.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/mean.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/MCMC.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
creating build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_utils.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_MCMCSampler.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_database.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_cov.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_container.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_missing.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_observation.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_realization.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_convergence.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_AM.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_basiscov.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_GP_MCMC.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_norm_approx.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_mean.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_distributions.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_slice.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_binary_step.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_adaptive.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_special_methods.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_instantiation.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/objectmodel.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_graph.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_gradients.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_interactive.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
creating build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/step_methods.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/Realization.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/gp_submodel.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/gpplots.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/GPutils.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/Covariance.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/Mean.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/FullRankCovariance.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/NearlyFullRankCovariance.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/BasisCovariance.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
creating build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp/cov_funs
copying pymc/gp/cov_funs/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp/cov_funs
copying pymc/gp/cov_funs/wrapped_distances.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp/cov_funs
copying pymc/gp/cov_funs/brownian.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp/cov_funs
copying pymc/gp/cov_funs/nsmatern.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp/cov_funs
copying pymc/gp/cov_funs/cov_utils.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp/cov_funs
copying pymc/gp/cov_funs/bases.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp/cov_funs
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
CCompilerOpt.cc_test_flags[1013] : testing flags (-march=native)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks
compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-march=native'
CCompilerOpt.cc_test_flags[1013] : testing flags (-O3)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-O3'
CCompilerOpt.cc_test_flags[1013] : testing flags (-Werror)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-Werror'
CCompilerOpt.__init__[1701] : check requested baseline
CCompilerOpt.cc_test_flags[1013] : testing flags (-msse)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse'
CCompilerOpt.cc_test_flags[1013] : testing flags (-msse2)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse2'
CCompilerOpt.feature_test[1468] : testing feature 'SSE' with flags (-msse -msse2)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -Werror'
CCompilerOpt.feature_test[1468] : testing feature 'SSE2' with flags (-msse -msse2)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -Werror'
CCompilerOpt.cc_test_flags[1013] : testing flags (-msse3)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse3'
CCompilerOpt.feature_test[1468] : testing feature 'SSE3' with flags (-msse -msse2 -msse3)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -Werror'
CCompilerOpt.__init__[1710] : check requested dispatch-able features
CCompilerOpt.cc_test_flags[1013] : testing flags (-mssse3)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mssse3'
CCompilerOpt.cc_test_flags[1013] : testing flags (-msse4.1)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse4.1'
CCompilerOpt.cc_test_flags[1013] : testing flags (-mpopcnt)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mpopcnt'
CCompilerOpt.cc_test_flags[1013] : testing flags (-msse4.2)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse4.2'
CCompilerOpt.cc_test_flags[1013] : testing flags (-mavx)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mavx'
CCompilerOpt.cc_test_flags[1013] : testing flags (-mf16c)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mf16c'
CCompilerOpt.cc_test_flags[1013] : testing flags (-mfma)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mfma'
CCompilerOpt.cc_test_flags[1013] : testing flags (-mavx2)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64Collecting git+https://github.com/hddm-devs/hddm
Cloning https://github.com/hddm-devs/hddm to /private/var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/pip-req-build-n6q7vab3
Running command git clone --filter=blob:none --quiet https://github.com/hddm-devs/hddm /private/var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/pip-req-build-n6q7vab3
Resolved https://github.com/hddm-devs/hddm to commit a0d9dba42b22404a10068ad67aec4061132c369e

Running command git submodule update --init --recursive -q

Preparing metadata (setup.py) ... error

error: subprocess-exited-with-error

× python setup.py egg_info did not run successfully.
│ exit code: 1

╰─> [1100 lines of output]
error: subprocess-exited-with-error

× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [1057 lines of output]
running bdist_wheel
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "pymc.flib" sources
f2py options: ['skip:ppnd7']
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/fortranobject.c' to sources.
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc' to include_dirs.
adding 'build/src.macosx-10.9-x86_64-3.7/pymc/flib-f2pywrappers.f' to sources.
building extension "pymc.LazyFunction" sources
building extension "pymc.Container_values" sources
building extension "pymc.gp.linalg_utils" sources
f2py options: []
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp/fortranobject.c' to sources.
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp' to include_dirs.
building extension "pymc.gp.incomplete_chol" sources
f2py options: []
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp/fortranobject.c' to sources.
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp' to include_dirs.
building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources
f2py options: []
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp/cov_funs/fortranobject.c' to sources.
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp/cov_funs' to include_dirs.
adding 'build/src.macosx-10.9-x86_64-3.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources.
building extension "pymc.gp.cov_funs.distances" sources
f2py options: []
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp/cov_funs/fortranobject.c' to sources.
adding 'build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/gp/cov_funs' to include_dirs.
build_src: building npy-pkg config files
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
setuptools.SetuptoolsDeprecationWarning,
running build_py
creating build/lib.macosx-10.9-x86_64-cpython-37
creating build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/StepMethods.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/InstantiationDecorators.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/CircularStochastic.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/diagnostics.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/threadpool.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/graph.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/Matplot.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/Container.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/Model.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/distributions.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/MCMC.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/datatypes.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/NormalApproximation.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/progressbar.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/utils.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/PyMCObjects.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/six.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/Node.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/CommonDeterministics.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/calc_utils.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/NumpyDeterministics.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/ScipyDistributions.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
copying pymc/decorators.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc
creating build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/no_trace.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/txt.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/hdf5.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/sqlite.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/pickle.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/hdf5ea.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/ram.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
copying pymc/database/base.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/database
creating build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/melanoma.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/disaster_model_linear.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/disaster_model.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/disaster_model_gof.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/gelman_bioassay.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/weibull_fit_gof.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/melanoma_data.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/disaster_model_null.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/zip.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/custom_step.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/disaster_model_missing.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
copying pymc/examples/weibull_fit.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples
creating build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/covparams.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/observation.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/PyMCmodel.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/basiscov.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/realizations.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/mesh_choice.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/cov.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/mean.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
copying pymc/examples/gp/MCMC.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/examples/gp
creating build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_utils.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_MCMCSampler.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_database.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_cov.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_container.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_missing.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_observation.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_realization.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_convergence.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_AM.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_basiscov.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_GP_MCMC.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_norm_approx.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_mean.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_distributions.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_slice.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_binary_step.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_adaptive.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_special_methods.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_instantiation.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/objectmodel.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_graph.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_gradients.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
copying pymc/tests/test_interactive.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/tests
creating build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/step_methods.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/Realization.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/gp_submodel.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/gpplots.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/GPutils.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/Covariance.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/Mean.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/FullRankCovariance.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/NearlyFullRankCovariance.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
copying pymc/gp/BasisCovariance.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp
creating build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp/cov_funs
copying pymc/gp/cov_funs/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp/cov_funs
copying pymc/gp/cov_funs/wrapped_distances.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp/cov_funs
copying pymc/gp/cov_funs/brownian.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp/cov_funs
copying pymc/gp/cov_funs/nsmatern.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp/cov_funs
copying pymc/gp/cov_funs/cov_utils.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp/cov_funs
copying pymc/gp/cov_funs/bases.py -> build/lib.macosx-10.9-x86_64-cpython-37/pymc/gp/cov_funs
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
CCompilerOpt.cc_test_flags[1013] : testing flags (-march=native)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils
creating /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks
compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-march=native'
CCompilerOpt.cc_test_flags[1013] : testing flags (-O3)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-O3'
CCompilerOpt.cc_test_flags[1013] : testing flags (-Werror)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-Werror'
CCompilerOpt.__init__[1701] : check requested baseline
CCompilerOpt.cc_test_flags[1013] : testing flags (-msse)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse'
CCompilerOpt.cc_test_flags[1013] : testing flags (-msse2)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse2'
CCompilerOpt.feature_test[1468] : testing feature 'SSE' with flags (-msse -msse2)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -Werror'
CCompilerOpt.feature_test[1468] : testing feature 'SSE2' with flags (-msse -msse2)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -Werror'
CCompilerOpt.cc_test_flags[1013] : testing flags (-msse3)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse3'
CCompilerOpt.feature_test[1468] : testing feature 'SSE3' with flags (-msse -msse2 -msse3)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -Werror'
CCompilerOpt.__init__[1710] : check requested dispatch-able features
CCompilerOpt.cc_test_flags[1013] : testing flags (-mssse3)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mssse3'
CCompilerOpt.cc_test_flags[1013] : testing flags (-msse4.1)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse4.1'
CCompilerOpt.cc_test_flags[1013] : testing flags (-mpopcnt)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mpopcnt'
CCompilerOpt.cc_test_flags[1013] : testing flags (-msse4.2)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse4.2'
CCompilerOpt.cc_test_flags[1013] : testing flags (-mavx)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mavx'
CCompilerOpt.cc_test_flags[1013] : testing flags (-mf16c)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-protot

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mavx2'
CCompilerOpt.cc_test_flags[1013] : testing flags (-mavx512f)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mavx512f'
CCompilerOpt.feature_test[1468] : testing feature 'AVX512F' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -Werror'
CCompilerOpt.feature_test[1468] : testing feature 'POPCNT' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -Werror'
CCompilerOpt.cc_test_flags[1013] : testing flags (-mavx512cd)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mavx512cd'
CCompilerOpt.cc_test_flags[1013] : testing flags (-mavx512vl -mavx512bw -mavx512dq)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mavx512vl -mavx512bw -mavx512dq'
CCompilerOpt.feature_test[1468] : testing feature 'AVX512_SKX' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -Werror'
CCompilerOpt.feature_test[1468] : testing feature 'SSE41' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -Werror'
CCompilerOpt.feature_test[1468] : testing feature 'SSSE3' with flags (-msse -msse2 -msse3 -mssse3)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -Werror'
CCompilerOpt.feature_test[1468] : testing feature 'AVX512CD' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -Werror'
CCompilerOpt.feature_test[1468] : testing feature 'AVX' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -Werror'
CCompilerOpt.feature_test[1468] : testing feature 'FMA3' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -Werror'
CCompilerOpt.feature_test[1468] : testing feature 'SSE42' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -Werror'
CCompilerOpt.feature_test[1468] : testing feature 'F16C' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -Werror'
CCompilerOpt.feature_test[1468] : testing feature 'AVX2' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mavx2)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mavx2 -Werror'
CCompilerOpt.cc_test_flags[1013] : testing flags (-mavx512vnni)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mavx512vnni'
CCompilerOpt.feature_test[1468] : testing feature 'AVX512_CLX' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512vnni)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512vnni -Werror'
CCompilerOpt.cc_test_flags[1013] : testing flags (-mavx512ifma -mavx512vbmi)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mavx512ifma -mavx512vbmi'
CCompilerOpt.feature_test[1468] : testing feature 'AVX512_CNL' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512ifma -mavx512vbmi)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512ifma -mavx512vbmi -Werror'
CCompilerOpt.cc_test_flags[1013] : testing flags (-mavx512er -mavx512pf)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mavx512er -mavx512pf'
CCompilerOpt.feature_test[1468] : testing feature 'AVX512_KNL' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512er -mavx512pf)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512er -mavx512pf -Werror'
CCompilerOpt.cc_test_flags[1013] : testing flags (-mavx5124fmaps -mavx5124vnniw -mavx512vpopcntdq)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mavx5124fmaps -mavx5124vnniw -mavx512vpopcntdq'
CCompilerOpt.dist_test[581] : CCompilerOpt._dist_test_spawn[718] : Command (gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c /opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/test_flags.c -o /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/test_flags.o -MMD -MF /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/test_flags.o.d -mavx5124fmaps -mavx5124vnniw -mavx512vpopcntdq) failed with exit status 1 output ->
clang: error: unknown argument: '-mavx5124fmaps'
clang: error: unknown argument: '-mavx5124vnniw'

CCompilerOpt.cc_test_flags[1017] : testing failed
CCompilerOpt.feature_test[1468] : testing feature 'AVX512_KNM' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512er -mavx512pf)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512er -mavx512pf -Werror'
CCompilerOpt.dist_test[581] : CCompilerOpt._dist_test_spawn[718] : Command (gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c /opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/cpu_avx512_knm.c -o /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/cpu_avx512_knm.o -MMD -MF /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/cpu_avx512_knm.o.d -msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512er -mavx512pf -Werror) failed with exit status 1 output ->
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/cpu_avx512_knm.c:22:9: error: implicit declaration of function '_mm512_4fmadd_ps' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
b = _mm512_4fmadd_ps(b, b, b, b, b, NULL);
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/cpu_avx512_knm.c:22:9: note: did you mean '_mm512_fmadd_ps'?
/Library/Developer/CommandLineTools/usr/lib/clang/10.0.1/include/avx512fintrin.h:2725:1: note: '_mm512_fmadd_ps' declared here
_mm512_fmadd_ps(__m512 __A, __m512 __B, __m512 __C)
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/cpu_avx512_knm.c:22:9: error: this function declaration is not a prototype [-Werror,-Wstrict-prototypes]
b = _mm512_4fmadd_ps(b, b, b, b, b, NULL);
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/cpu_avx512_knm.c:22:7: error: assigning to '__m512' (vector of 16 'float' values) from incompatible type 'int'
b = _mm512_4fmadd_ps(b, b, b, b, b, NULL);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/cpu_avx512_knm.c:24:9: error: implicit declaration of function '_mm512_4dpwssd_epi32' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
a = _mm512_4dpwssd_epi32(a, a, a, a, a, NULL);
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/cpu_avx512_knm.c:24:9: note: did you mean '_mm512_dpwssd_epi32'?
/Library/Developer/CommandLineTools/usr/lib/clang/10.0.1/include/avx512vnniintrin.h:82:1: note: '_mm512_dpwssd_epi32' declared here
_mm512_dpwssd_epi32(__m512i __S, __m512i __A, __m512i __B)
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/cpu_avx512_knm.c:24:9: error: this function declaration is not a prototype [-Werror,-Wstrict-prototypes]
a = _mm512_4dpwssd_epi32(a, a, a, a, a, NULL);
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/cpu_avx512_knm.c:24:7: error: assigning to '__m512i' (vector of 8 'long long' values) from incompatible type 'int'
a = _mm512_4dpwssd_epi32(a, a, a, a, a, NULL);
^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
6 errors generated.

CCompilerOpt.feature_test[1482] : testing failed
CCompilerOpt.cc_test_flags[1013] : testing flags (-mavx512vbmi2 -mavx512bitalg -mavx512vpopcntdq)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-mavx512vbmi2 -mavx512bitalg -mavx512vpopcntdq'
CCompilerOpt.feature_test[1468] : testing feature 'AVX512_ICL' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512vnni -mavx512ifma -mavx512vbmi -mavx512vbmi2 -mavx512bitalg -mavx512vpopcntdq)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512vnni -mavx512ifma -mavx512vbmi -mavx512vbmi2 -mavx512bitalg -mavx512vpopcntdq -Werror'
CCompilerOpt.__init__[1723] : skip features (SSE2 SSE3 SSE) since its part of baseline
CCompilerOpt.__init__[1726] : initialize targets groups
CCompilerOpt.__init__[1728] : parse target group simd_test
CCompilerOpt._parse_target_tokens[1941] : skip targets (VSX2 VSX3 XOP ASIMD FMA4 VSX NEON) not part of baseline or dispatch-able features
CCompilerOpt._parse_policy_not_keepbase[2051] : skip baseline features (SSE2)
CCompilerOpt.generate_dispatch_header[2272] : generate CPU dispatch header: (build/src.macosx-10.9-x86_64-3.7/numpy/distutils/include/npy_cpu_dispatch_config.h)
CCompilerOpt.generate_dispatch_header[2283] : dispatch header dir build/src.macosx-10.9-x86_64-3.7/numpy/distutils/include does not exist, creating it
CCompilerOpt.feature_extra_checks[1546] : Testing extra checks for feature 'AVX512F' (AVX512F_REDUCE)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -Werror'
CCompilerOpt.feature_extra_checks[1546] : Testing extra checks for feature 'AVX512_SKX' (AVX512BW_MASK AVX512DQ_MASK)
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -Werror'
CCompilerOpt.dist_test[581] : CCompilerOpt._dist_test_spawn[718] : Command (gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c /opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512bw_mask.c -o /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512bw_mask.o -MMD -MF /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512bw_mask.o.d -msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -Werror) failed with exit status 1 output ->
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512bw_mask.c:12:11: error: implicit declaration of function '_kor_mask64' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
m64 = _kor_mask64(m64, m64);
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512bw_mask.c:12:11: error: this function declaration is not a prototype [-Werror,-Wstrict-prototypes]
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512bw_mask.c:13:11: error: implicit declaration of function '_kxor_mask64' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
m64 = _kxor_mask64(m64, m64);
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512bw_mask.c:13:11: note: did you mean '_kor_mask64'?
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512bw_mask.c:12:11: note: '_kor_mask64' declared here
m64 = _kor_mask64(m64, m64);
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512bw_mask.c:13:11: error: this function declaration is not a prototype [-Werror,-Wstrict-prototypes]
m64 = _kxor_mask64(m64, m64);
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512bw_mask.c:14:11: error: implicit declaration of function '_cvtu64_mask64' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
m64 = _cvtu64_mask64(_cvtmask64_u64(m64));
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512bw_mask.c:14:11: error: this function declaration is not a prototype [-Werror,-Wstrict-prototypes]
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512bw_mask.c:14:26: error: implicit declaration of function '_cvtmask64_u64' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
m64 = _cvtu64_mask64(_cvtmask64_u64(m64));
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512bw_mask.c:14:26: error: this function declaration is not a prototype [-Werror,-Wstrict-prototypes]
8 errors generated.

C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

compile options: '-I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -Werror'
CCompilerOpt.dist_test[581] : CCompilerOpt._dist_test_spawn[718] : Command (gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c /opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512dq_mask.c -o /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512dq_mask.o -MMD -MF /var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmp3pcfrk_i/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512dq_mask.o.d -msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -mavx512dq -Werror) failed with exit status 1 output ->
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512dq_mask.c:12:10: error: implicit declaration of function '_kor_mask8' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
m8 = _kor_mask8(m8, m8);
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512dq_mask.c:12:10: error: this function declaration is not a prototype [-Werror,-Wstrict-prototypes]
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512dq_mask.c:13:10: error: implicit declaration of function '_kxor_mask8' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
m8 = _kxor_mask8(m8, m8);
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512dq_mask.c:13:10: note: did you mean '_kor_mask8'?
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512dq_mask.c:12:10: note: '_kor_mask8' declared here
m8 = _kor_mask8(m8, m8);
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512dq_mask.c:13:10: error: this function declaration is not a prototype [-Werror,-Wstrict-prototypes]
m8 = _kxor_mask8(m8, m8);
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512dq_mask.c:14:10: error: implicit declaration of function '_cvtu32_mask8' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
m8 = _cvtu32_mask8(_cvtmask8_u32(m8));
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512dq_mask.c:14:10: error: this function declaration is not a prototype [-Werror,-Wstrict-prototypes]
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512dq_mask.c:14:24: error: implicit declaration of function '_cvtmask8_u32' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
m8 = _cvtu32_mask8(_cvtmask8_u32(m8));
^
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/distutils/checks/extra_avx512dq_mask.c:14:24: error: this function declaration is not a prototype [-Werror,-Wstrict-prototypes]
8 errors generated.

CCompilerOpt.feature_extra_checks[1564] : testing failed for checks (AVX512BW_MASK AVX512DQ_MASK)
get_default_fcompiler: matching types: '['gnu95', 'nag', 'absoft', 'ibm', 'intel', 'gnu', 'g95', 'pg']'
customize Gnu95FCompiler
Found executable /usr/local/bin/gfortran
customize Gnu95FCompiler
customize Gnu95FCompiler using build_ext
building 'pymc.flib' extension
compiling C sources
C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64 -I/opt/anaconda3/envs/pyHDDM/include -arch x86_64

creating build/temp.macosx-10.9-x86_64-cpython-37/cephes
creating build/temp.macosx-10.9-x86_64-cpython-37/build
creating build/temp.macosx-10.9-x86_64-cpython-37/build/src.macosx-10.9-x86_64-3.7
creating build/temp.macosx-10.9-x86_64-cpython-37/build/src.macosx-10.9-x86_64-3.7/pymc
creating build/temp.macosx-10.9-x86_64-cpython-37/build/src.macosx-10.9-x86_64-3.7/build
creating build/temp.macosx-10.9-x86_64-cpython-37/build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7
creating build/temp.macosx-10.9-x86_64-cpython-37/build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc
compile options: '-DNO_ATLAS_INFO=3 -DHAVE_CBLAS -Ibuild/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc -I/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/core/include -Ibuild/src.macosx-10.9-x86_64-3.7/numpy/distutils/include -I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
extra options: '-msse3 -I/System/Library/Frameworks/vecLib.framework/Headers -msse -msse2 -msse3'
gcc: cephes/i0.c
gcc: cephes/chbevl.cgcc: cephes/c2f.c

gcc: build/src.macosx-10.9-x86_64-3.7/pymc/flibmodule.c
cephes/c2f.c:8:11: warning: this old-style function definition is not preceded by a prototype [-Wstrict-prototypes]
double i0_(x)
^
cephes/i0.c:372:30: warning: incompatible pointer types passing 'unsigned short [120]' to parameter of type 'double *' [-Wincompatible-pointer-types]
return( exp(x) * chbevl( y, A, 30 ) );
^
cephes/i0.c:355:40: note: passing argument to parameter here
extern double chbevl ( double, double *, int );
^
cephes/i0.c:375:41: warning: incompatible pointer types passing 'unsigned short [100]' to parameter of type 'double *' [-Wincompatible-pointer-types]
return( exp(x) * chbevl( 32.0/x - 2.0, B, 25 ) / sqrt(x) );
^
cephes/i0.c:355:40: note: passing argument to parameter here
extern double chbevl ( double, double *, int );
^
cephes/i0.c:392:21: warning: incompatible pointer types passing 'unsigned short [120]' to parameter of type 'double *' [-Wincompatible-pointer-types]
return( chbevl( y, A, 30 ) );
^
cephes/i0.c:355:40: note: passing argument to parameter here
extern double chbevl ( double, double *, int );
^
cephes/i0.c:395:32: warning: incompatible pointer types passing 'unsigned short [100]' to parameter of type 'double *' [-Wincompatible-pointer-types]
return( chbevl( 32.0/x - 2.0, B, 25 ) / sqrt(x) );
^
cephes/i0.c:355:40: note: passing argument to parameter here
extern double chbevl ( double, double *, int );
^
1 warning generated.
gcc: build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/fortranobject.c
4 warnings generated.
In file included from build/src.macosx-10.9-x86_64-3.7/pymc/flibmodule.c:16:
In file included from build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/fortranobject.h:13:
In file included from /opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969:
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
In file included from build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/fortranobject.c:2:
In file included from build/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc/fortranobject.h:13:
In file included from /opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969:
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
^
build/src.macosx-10.9-x86_64-3.7/pymc/flibmodule.c:17479:7: warning: array index 2 is past the end of the array (which contains 2 elements) [-Warray-bounds]
d = shape(x,2);
^ ~
build/src.macosx-10.9-x86_64-3.7/pymc/flibmodule.c:91:24: note: expanded from macro 'shape'
#define shape(var,dim) var ## _Dims[dim]
^ ~~~
<scratch space>:254:1: note: expanded from here
x_Dims
^
build/src.macosx-10.9-x86_64-3.7/pymc/flibmodule.c:17420:3: note: array 'x_Dims' declared here
npy_intp x_Dims[2] = {-1, -1};
^
build/src.macosx-10.9-x86_64-3.7/pymc/flibmodule.c:186:12: warning: unused function 'f2py_size' [-Wunused-function]
static int f2py_size(PyArrayObject* var, ...)
^
1 warning generated.
3 warnings generated.
compiling Fortran sources
Fortran f77 compiler: /usr/local/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -arch x86_64 -fPIC -O3 -funroll-loops
Fortran f90 compiler: /usr/local/bin/gfortran -Wall -g -fno-second-underscore -arch x86_64 -fPIC -O3 -funroll-loops
Fortran fix compiler: /usr/local/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -arch x86_64 -fPIC -O3 -funroll-loops
creating build/temp.macosx-10.9-x86_64-cpython-37/pymc
compile options: '-DNO_ATLAS_INFO=3 -DHAVE_CBLAS -Ibuild/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc -I/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/core/include -Ibuild/src.macosx-10.9-x86_64-3.7/numpy/distutils/include -I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c'
gfortran:f77: pymc/flib.f
gfortran:f77: pymc/histogram.f
gfortran:f77: pymc/blas_wrap.f
gfortran:f77: pymc/flib_blas.f
f951: Warning: Nonconforming tab character in column 1 of line 509 [-Wtabs]
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pymc/histogram.f:235:72:

235 | 1 ORD(I)=I
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1)
pymc/flib_blas.f:202:25:

202 | DOUBLE PRECISION PI
| 1
Warning: Unused variable 'pi' declared at (1) [-Wunused-variable]
pymc/flib.f:316:55:

316 | DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like
| 1
Warning: Unused variable 'd_now' declared at (1) [-Wunused-variable]
pymc/flib.f:314:42:

314 | INTEGER i, nx, nalph, nmu, ntau, tnx
| 1
Warning: Unused variable 'tnx' declared at (1) [-Wunused-variable]
pymc/flib.f:442:71:

442 | subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike)
| 1
Warning: Unused dummy argument 'gradxlike' at (1) [-Wunused-dummy-argument]
pymc/flib.f:461:40:

461 | DOUBLE PRECISION like, low, high
| 1
Warning: Unused variable 'high' declared at (1) [-Wunused-variable]
pymc/flib.f:458:36:

458 | INTEGER n, nlower, nupper, i
| 1
Warning: Unused variable 'i' declared at (1) [-Wunused-variable]
pymc/flib.f:461:29:

461 | DOUBLE PRECISION like, low, high
| 1
Warning: Unused variable 'like' declared at (1) [-Wunused-variable]
pymc/flib.f:461:34:

461 | DOUBLE PRECISION like, low, high
| 1
Warning: Unused variable 'low' declared at (1) [-Wunused-variable]
pymc/flib.f:442:39:

442 | subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike)
| 1
Warning: Unused dummy argument 'lower' at (1) [-Wunused-dummy-argument]
pymc/flib.f:442:45:

442 | subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike)
| 1
Warning: Unused dummy argument 'upper' at (1) [-Wunused-dummy-argument]
pymc/flib.f:442:33:

442 | subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike)
| 1
Warning: Unused dummy argument 'x' at (1) [-Wunused-dummy-argument]
pymc/flib.f:692:41:

692 | DOUBLE PRECISION aa, cc, sigma, pdf
| 1
Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable]
pymc/flib.f:760:41:

760 | DOUBLE PRECISION aa, cc, sigma, pdf
| 1
Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable]
pymc/flib.f:834:41:

834 | DOUBLE PRECISION aa, cc, sigma, pdf
| 1
Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable]
pymc/flib.f:906:41:

906 | DOUBLE PRECISION aa, cc, sigma, pdf
| 1
Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable]
pymc/flib.f:976:41:

976 | DOUBLE PRECISION aa, cc, sigma, pdf
| 1
Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable]
pymc/flib.f:1186:29:

1186 | DOUBLE PRECISION factln
| 1
Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
pymc/flib.f:1185:51:

1185 | DOUBLE PRECISION sumx, mut, infinity, sumfact
| 1
Warning: Unused variable 'sumfact' declared at (1) [-Wunused-variable]
pymc/flib.f:1185:27:

1185 | DOUBLE PRECISION sumx, mut, infinity, sumfact
| 1
Warning: Unused variable 'sumx' declared at (1) [-Wunused-variable]
pymc/flib.f:1300:55:

1300 | DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf
| 1
Warning: Unused variable 'cdf' declared at (1) [-Wunused-variable]
pymc/flib.f:1302:29:

1302 | DOUBLE PRECISION factln, gammq
| 1
Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
pymc/flib.f:1302:36:

1302 | DOUBLE PRECISION factln, gammq
| 1
Warning: Unused variable 'gammq' declared at (1) [-Wunused-variable]
pymc/flib.f:1301:59:

1301 | DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf
| 1
Warning: Unused variable 'sumcdf' declared at (1) [-Wunused-variable]
pymc/flib.f:1301:51:

1301 | DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf
| 1
Warning: Unused variable 'sumfact' declared at (1) [-Wunused-variable]
pymc/flib.f:1301:27:

1301 | DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf
| 1
Warning: Unused variable 'sumx' declared at (1) [-Wunused-variable]
pymc/flib.f:1402:29:

1402 | DOUBLE PRECISION gammln
| 1
Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
pymc/flib.f:2154:40:

2154 | DOUBLE PRECISION gradlike(n), grad
| 1
Warning: Unused variable 'grad' declared at (1) [-Wunused-variable]
pymc/flib.f:2665:29:

2665 | DOUBLE PRECISION gammln
| 1
Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
pymc/flib.f:2728:29:

2728 | DOUBLE PRECISION gammln, psi
| 1
Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
pymc/flib.f:2793:29:

2793 | DOUBLE PRECISION gammln
| 1
Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
pymc/flib.f:2903:29:

2903 | DOUBLE PRECISION gammln
| 1
Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
pymc/flib.f:2959:29:

2959 | DOUBLE PRECISION gammln, psi
| 1
Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
pymc/flib.f:3021:29:

3021 | DOUBLE PRECISION gammln
| 1
Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
pymc/flib.f:3396:58:

3396 | DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike
| 1
Warning: Unused variable 'glike' declared at (1) [-Wunused-variable]
pymc/flib.f:3646:37:

3646 | DOUBLE PRECISION gammln, factln
| 1
Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
pymc/flib.f:3646:29:

3646 | DOUBLE PRECISION gammln, factln
| 1
Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
pymc/flib.f:3706:37:

3706 | DOUBLE PRECISION gammln, factln, psi
| 1
Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
pymc/flib.f:3706:29:

3706 | DOUBLE PRECISION gammln, factln, psi
| 1
Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
pymc/flib.f:3836:29:

3836 | DOUBLE PRECISION factln
| 1
Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
pymc/flib.f:4039:26:

4039 | DOUBLE PRECISION psi
| 1
Warning: Unused variable 'psi' declared at (1) [-Wunused-variable]
pymc/flib.f:4276:29:

4276 | DOUBLE PRECISION gammln, psi
| 1
Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
pymc/flib.f:4342:29:

4342 | DOUBLE PRECISION gammln, psi
| 1
Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable]
pymc/flib.f:5194:35:

5194 | DOUBLE PRECISION like, factln, infinity, sump
| 1
Warning: Unused variable 'factln' declared at (1) [-Wunused-variable]
pymc/flib.f:5196:23:

5196 | INTEGER i,j,n_tmp
| 1
Warning: Unused variable 'n_tmp' declared at (1) [-Wunused-variable]
pymc/flib.f:5444:26:

5444 | DOUBLE PRECISION tmp
| 1
Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable]
pymc/flib.f:5498:25:

5498 | DOUBLE PRECISION i0
| 1
Warning: Unused variable 'i0' declared at (1) [-Wunused-variable]
pymc/flib.f:5491:26:

5491 | DOUBLE PRECISION tmp
| 1
Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable]
pymc/flib.f:5545:25:

5545 | DOUBLE PRECISION i0
| 1
Warning: Unused variable 'i0' declared at (1) [-Wunused-variable]
pymc/flib.f:5538:26:

5538 | DOUBLE PRECISION tmp
| 1
Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable]
gfortran:f77: pymc/math.f
gfortran:f77: pymc/gibbsit.f
pymc/math.f:396:6:

396 | DOUBLE PRECISION FUNCTION DERF(X)
| 1
Warning: 'derf' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow]
pymc/math.f:417:6:

417 | DOUBLE PRECISION FUNCTION DERFC(X)
| 1
Warning: 'derfc' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow]
gfortran:f77: build/src.macosx-10.9-x86_64-3.7/pymc/flib-f2pywrappers.f
pymc/gibbsit.f:2066:72:

2066 | 20 X(I) = -X(I)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1)
pymc/gibbsit.f:2255:72:

2255 | 310 X(I) = -X(I)
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 310 at (1)
pymc/gibbsit.f:2160:5:

2160 | 215 IF (R .GT. .5898437) GO TO 220
| 1
Warning: Label 215 at (1) defined but not used [-Wunused-label]
pymc/gibbsit.f:2077:5:

2077 | 115 IF (R .GT. .5898437) GO TO 120
| 1
Warning: Label 115 at (1) defined but not used [-Wunused-label]
pymc/gibbsit.f:2064:5:

2064 | 15 IF (KFLAG.GE.1) GO TO 30
| 1
Warning: Label 15 at (1) defined but not used [-Wunused-label]
pymc/gibbsit.f:1204:16:

1204 | cutpt = empquant(original,iteracnt,qhat,work)
| 1
Error: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8)
pymc/flib.f:4892:13:

4892 | K = I
| ^
Warning: 'k' may be used uninitialized [-Wmaybe-uninitialized]
pymc/flib.f:2494:72:

2494 | quad = 1.0/beta * (1.-rho**2)*r(1)**2
| ^
Warning: 'MEM[(real(kind=8)[0:D.7472] *)_64][0]' may be used uninitialized [-Wmaybe-uninitialized]
error: Command "/usr/local/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -arch x86_64 -fPIC -O3 -funroll-loops -DNO_ATLAS_INFO=3 -DHAVE_CBLAS -Ibuild/src.macosx-10.9-x86_64-3.7/build/src.macosx-10.9-x86_64-3.7/pymc -I/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/numpy/core/include -Ibuild/src.macosx-10.9-x86_64-3.7/numpy/distutils/include -I/opt/anaconda3/envs/pyHDDM/include/python3.7m -c -c pymc/gibbsit.f -o build/temp.macosx-10.9-x86_64-cpython-37/pymc/gibbsit.o" failed with exit status 1

########### EXT COMPILER OPTIMIZATION ###########
Platform :
Architecture: x64
Compiler : gcc

CPU baseline :
Requested : 'min'
Enabled : SSE SSE2 SSE3
Flags : -msse -msse2 -msse3
Extra checks: none

CPU dispatch :
Requested : 'max -xop -fma4'
Enabled : SSSE3 SSE41 POPCNT SSE42 AVX F16C FMA3 AVX2 AVX512F AVX512CD AVX512_KNL AVX512_SKX AVX512_CLX AVX512_CNL AVX512_ICL
Generated : none
CCompilerOpt.cache_flush[809] : write cache to path -> /private/var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/pip-wheel-6989yrgy/pymc_dea95059de9e4d778549b4ad307bab21/build/temp.macosx-10.9-x86_64-cpython-37/ccompiler_opt_cache_ext.py

[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.

ERROR: Failed building wheel for PyMC
ERROR: Failed to build one or more wheels
/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/setuptools/installer.py:30: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.

SetuptoolsDeprecationWarning,
Traceback (most recent call last):

File "/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/setuptools/installer.py", line 82, in fetch_build_egg
subprocess.check_call(cmd)
File "/opt/anaconda3/envs/pyHDDM/lib/python3.7/subprocess.py", line 363, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/opt/anaconda3/envs/pyHDDM/bin/python', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmpnyinb_f4', '--quiet', 'PyMC<3.0.0,>=2.3.3']' returned non-zero exit status 1.

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
File "<string>", line 36, in <module>
File "<pip-setuptools-caller>", line 34, in <module>

File "/private/var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/pip-req-build-n6q7vab3/setup.py", line 41, in <module>
ext_modules = ext_modules
File "/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/setuptools/__init__.py", line 86, in setup
_install_setup_requires(attrs)
File "/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/setuptools/__init__.py", line 80, in _install_setup_requires
dist.fetch_build_eggs(dist.setup_requires)
File "/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/setuptools/dist.py", line 878, in fetch_build_eggs
replace_conflicting=True,
File "/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/pkg_resources/__init__.py", line 791, in resolve
replace_conflicting=replace_conflicting
File "/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/pkg_resources/__init__.py", line 1075, in best_match
return self.obtain(req, installer)
File "/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/pkg_resources/__init__.py", line 1087, in obtain
return installer(requirement)
File "/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/setuptools/dist.py", line 945, in fetch_build_egg
return fetch_build_egg(self, req)
File "/opt/anaconda3/envs/pyHDDM/lib/python3.7/site-packages/setuptools/installer.py", line 84, in fetch_build_egg
raise DistutilsError(str(e)) from e
distutils.errors.DistutilsError: Command '['/opt/anaconda3/envs/pyHDDM/bin/python', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/var/folders/1b/fsqzzqpn08s3164vrsq65b840000gn/T/tmpnyinb_f4', '--quiet', 'PyMC<3.0.0,>=2.3.3']' returned non-zero exit status 1.

[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed

× Encountered error while generating package metadata.
╰─> See above for output.

note: This is an issue with the package mentioned above, not pip.
hint: See above for details.

Fengler, Alexander

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Jan 4, 2023, 4:41:03 PM1/4/23

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Hi Sean,

hm this is on a windows machine?

Not exactly sure what the issue with HDF5 is there....

Not even sure where the requirement for that comes from to begin with.

Could you check if you run into any trouble running the tutorials here in a colab?

I suspect this is an issue with your particular setup, but let's first make sure.

Best,

Alex

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Fengler, Alexander

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Jan 4, 2023, 4:42:46 PM1/4/23

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Hey Leyla,

are you on a new MAC with M1 chip?

Best,

Alex

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Leyla

unread,

Jan 5, 2023, 8:30:07 AM1/5/23

to hddm-users

Hi,

I'm not, I'm on an older machine but I've moved forward in the installation by running the following (in a new environment):

brew install hdf5 netcdf
git clone https://github.com/Unidata/netcdf4-python.git
HDF5_DIR=$(brew --prefix hdf5) pip install ./netcdf4-python

and then, per a user's suggestion:

conda install pymc=2.3.8 -c conda-forge

conda install pandas patsy

export MACOSX_DEPLOYMENT_TARGET=10.14.6

pip install cython

pip install hddm

However, I still can't run HDDM because there's an error in pymc, which I'm currently checking with their developers.

Cheers,

Leyla

Sean van Mil

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Jan 5, 2023, 12:31:10 PM1/5/23

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Hi Alex,

Thanks for the quick response. I checked it and indeed, I don't run into any issues when running the chunks of code in the colab link you sent me.

What set-up problems do you suspect might be at play here? The initial script I was trying to run this in was in a Google Drive folder, which I thought might be the issue, but after trying the same in a script located in my user folder on my C: disk the same error occurred...

Best,

Sean

Op wo 4 jan. 2023 om 22:41 schreef Fengler, Alexander <alexande...@brown.edu>:

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Sean van Mil

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Jan 5, 2023, 3:37:24 PM1/5/23

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Update, I decided to uninstall and reinstall Anaconda to start with a clean slate, but this did not help unfortunately...

Now, I also get errors when running the pip install pymc==2.3.8 line of code... It's a long error message, apologies.

I verified I have the wheel package installed already. Again, any suggestions are welcome.

Thanks,

Sean

Collecting pymc==2.3.8
  Using cached pymc-2.3.8.tar.gz (385 kB)
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: pymc
  Building wheel for pymc (setup.py): started
  Building wheel for pymc (setup.py): finished with status 'error'
  Running setup.py clean for pymc
Failed to build pymc
Installing collected packages: pymc
  Running setup.py install for pymc: started
  Running setup.py install for pymc: finished with status 'error'
Note: you may need to restart the kernel to use updated packages.

  error: subprocess-exited-with-error
  
  python setup.py bdist_wheel did not run successfully.
  exit code: 1
  
  [185 lines of output]
  Could not locate executable g77
  Could not locate executable f77
  Could not locate executable ifort
  Could not locate executable ifl
  Could not locate executable f90
  Could not locate executable C:\Program
  Could not locate executable efl
  Could not locate executable gfortran
  Could not locate executable f95
  Could not locate executable g95
  Could not locate executable efort
  Could not locate executable efc
  Could not locate executable flang
  don't know how to compile Fortran code on platform 'nt'
  C:\Users\seanv\anaconda3\lib\site-packages\numpy\distutils\system_info.py:1858: UserWarning:
      Lapack (http://www.netlib.org/lapack/) libraries not found.
      Directories to search for the libraries can be specified in the
      numpy/distutils/site.cfg file (section [lapack]) or by setting
      the LAPACK environment variable.
    return getattr(self, '_calc_info_{}'.format(name))()
  C:\Users\seanv\anaconda3\lib\site-packages\numpy\distutils\system_info.py:1858: UserWarning:
      Lapack (http://www.netlib.org/lapack/) sources not found.
      Directories to search for the sources can be specified in the
      numpy/distutils/site.cfg file (section [lapack_src]) or by setting
      the LAPACK_SRC environment variable.
    return getattr(self, '_calc_info_{}'.format(name))()
  C:\Users\seanv\anaconda3\lib\site-packages\numpy\distutils\system_info.py:581: UserWarning:
      Lapack (http://www.netlib.org/lapack/) libraries not found.
      Directories to search for the libraries can be specified in the
      numpy/distutils/site.cfg file (section [lapack]) or by setting
      the LAPACK environment variable.
    return cl().get_info(notfound_action)
  No optimized BLAS or Lapack libraries found, building from source. This may take a while...
  No optimized BLAS or Lapack libraries found, building from source. This may take a while...
  running bdist_wheel
  running build
  running config_cc
  unifing config_cc, config, build_clib, build_ext, build commands --compiler options
  running config_fc
  unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
  running build_src
  build_src
  building extension "pymc.flib" sources
  f2py options: []
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\fortranobject.c' to sources.
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc' to include_dirs.
    adding 'build\src.win-amd64-3.9\pymc\flib-f2pywrappers.f' to sources.
  building extension "pymc.LazyFunction" sources
  building extension "pymc.Container_values" sources
  building extension "pymc.gp.linalg_utils" sources
  f2py options: []
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp\fortranobject.c' to sources.
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp' to include_dirs.
    adding 'build\src.win-amd64-3.9\pymc\gp\linalg_utils-f2pywrappers.f' to sources.
  building extension "pymc.gp.incomplete_chol" sources
  f2py options: []
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp\fortranobject.c' to sources.
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp' to include_dirs.
    adding 'build\src.win-amd64-3.9\pymc\gp\incomplete_chol-f2pywrappers.f' to sources.
  building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources
  f2py options: []
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp\cov_funs\fortranobject.c' to sources.
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp\cov_funs' to include_dirs.
    adding 'build\src.win-amd64-3.9\pymc\gp\cov_funs\isotropic_cov_funs-f2pywrappers.f' to sources.
  building extension "pymc.gp.cov_funs.distances" sources
  f2py options: []
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp\cov_funs\fortranobject.c' to sources.
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp\cov_funs' to include_dirs.
  build_src: building npy-pkg config files
  C:\Users\seanv\anaconda3\lib\site-packages\setuptools\command\install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
    warnings.warn(
  running build_py
  creating build\lib.win-amd64-cpython-39
  creating build\lib.win-amd64-cpython-39\pymc
  copying pymc\calc_utils.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\CircularStochastic.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\CommonDeterministics.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\Container.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\datatypes.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\decorators.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\diagnostics.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\distributions.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\graph.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\InstantiationDecorators.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\Matplot.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\MCMC.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\Model.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\Node.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\NormalApproximation.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\NumpyDeterministics.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\progressbar.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\PyMCObjects.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\ScipyDistributions.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\six.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\StepMethods.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\threadpool.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\utils.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\__init__.py -> build\lib.win-amd64-cpython-39\pymc
  creating build\lib.win-amd64-cpython-39\pymc\database
  copying pymc/database\base.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\hdf5.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\hdf5ea.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\no_trace.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\pickle.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\ram.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\sqlite.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\txt.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\__init__.py -> build\lib.win-amd64-cpython-39\pymc/database
  creating build\lib.win-amd64-cpython-39\pymc\examples
  copying pymc/examples\custom_step.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\disaster_model.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\disaster_model_gof.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\disaster_model_linear.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\disaster_model_missing.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\disaster_model_null.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\gelman_bioassay.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\melanoma.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\melanoma_data.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\weibull_fit.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\weibull_fit_gof.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\zip.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\__init__.py -> build\lib.win-amd64-cpython-39\pymc/examples
  creating build\lib.win-amd64-cpython-39\pymc\examples\gp
  copying pymc/examples/gp\basiscov.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\cov.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\covparams.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\MCMC.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\mean.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\mesh_choice.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\observation.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\PyMCmodel.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\realizations.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\__init__.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  creating build\lib.win-amd64-cpython-39\pymc\tests
  copying pymc/tests\objectmodel.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_adaptive.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_AM.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_basiscov.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_binary_step.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_container.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_convergence.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_cov.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_database.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_distributions.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_GP_MCMC.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_gradients.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_graph.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_instantiation.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_interactive.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_MCMCSampler.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_mean.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_missing.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_norm_approx.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_observation.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_realization.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_slice.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_special_methods.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_utils.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\__init__.py -> build\lib.win-amd64-cpython-39\pymc/tests
  creating build\lib.win-amd64-cpython-39\pymc\gp
  copying pymc/gp\BasisCovariance.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\Covariance.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\FullRankCovariance.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\gpplots.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\GPutils.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\gp_submodel.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\Mean.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\NearlyFullRankCovariance.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\Realization.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\step_methods.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\__init__.py -> build\lib.win-amd64-cpython-39\pymc/gp
  creating build\lib.win-amd64-cpython-39\pymc\gp\cov_funs
  copying pymc/gp/cov_funs\bases.py -> build\lib.win-amd64-cpython-39\pymc/gp/cov_funs
  copying pymc/gp/cov_funs\brownian.py -> build\lib.win-amd64-cpython-39\pymc/gp/cov_funs
  copying pymc/gp/cov_funs\cov_utils.py -> build\lib.win-amd64-cpython-39\pymc/gp/cov_funs
  copying pymc/gp/cov_funs\nsmatern.py -> build\lib.win-amd64-cpython-39\pymc/gp/cov_funs
  copying pymc/gp/cov_funs\wrapped_distances.py -> build\lib.win-amd64-cpython-39\pymc/gp/cov_funs
  copying pymc/gp/cov_funs\__init__.py -> build\lib.win-amd64-cpython-39\pymc/gp/cov_funs
  running build_ext
  No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
  customize MSVCCompiler
  customize MSVCCompiler using build_ext
  CCompilerOpt.cc_test_flags[1013] : testing flags (/O2)
  error: Microsoft Visual C++ 14.0 or greater is required. Get it with "Microsoft C++ Build Tools": https://visualstudio.microsoft.com/visual-cpp-build-tools/
  CCompilerOpt.cache_flush[809] : write cache to path -> C:\Users\seanv\AppData\Local\Temp\pip-install-gwnzp4qv\pymc_491ec86ffeb24d5a84f8285c865eee39\build\temp.win-amd64-cpython-39\Release\ccompiler_opt_cache_ext.py
  [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for pymc
  error: subprocess-exited-with-error
  
  Running setup.py install for pymc did not run successfully.
  exit code: 1
  
  [185 lines of output]
  Could not locate executable g77
  Could not locate executable f77
  Could not locate executable ifort
  Could not locate executable ifl
  Could not locate executable f90
  Could not locate executable C:\Program
  Could not locate executable efl
  Could not locate executable gfortran
  Could not locate executable f95
  Could not locate executable g95
  Could not locate executable efort
  Could not locate executable efc
  Could not locate executable flang
  don't know how to compile Fortran code on platform 'nt'
  C:\Users\seanv\anaconda3\lib\site-packages\numpy\distutils\system_info.py:1858: UserWarning:
      Lapack (http://www.netlib.org/lapack/) libraries not found.
      Directories to search for the libraries can be specified in the
      numpy/distutils/site.cfg file (section [lapack]) or by setting
      the LAPACK environment variable.
    return getattr(self, '_calc_info_{}'.format(name))()
  C:\Users\seanv\anaconda3\lib\site-packages\numpy\distutils\system_info.py:1858: UserWarning:
      Lapack (http://www.netlib.org/lapack/) sources not found.
      Directories to search for the sources can be specified in the
      numpy/distutils/site.cfg file (section [lapack_src]) or by setting
      the LAPACK_SRC environment variable.
    return getattr(self, '_calc_info_{}'.format(name))()
  C:\Users\seanv\anaconda3\lib\site-packages\numpy\distutils\system_info.py:581: UserWarning:
      Lapack (http://www.netlib.org/lapack/) libraries not found.
      Directories to search for the libraries can be specified in the
      numpy/distutils/site.cfg file (section [lapack]) or by setting
      the LAPACK environment variable.
    return cl().get_info(notfound_action)
  No optimized BLAS or Lapack libraries found, building from source. This may take a while...
  No optimized BLAS or Lapack libraries found, building from source. This may take a while...
  running install
  C:\Users\seanv\anaconda3\lib\site-packages\setuptools\command\install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
    warnings.warn(
  running build
  running config_cc
  unifing config_cc, config, build_clib, build_ext, build commands --compiler options
  running config_fc
  unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
  running build_src
  build_src
  building extension "pymc.flib" sources
  f2py options: []
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\fortranobject.c' to sources.
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc' to include_dirs.
    adding 'build\src.win-amd64-3.9\pymc\flib-f2pywrappers.f' to sources.
  building extension "pymc.LazyFunction" sources
  building extension "pymc.Container_values" sources
  building extension "pymc.gp.linalg_utils" sources
  f2py options: []
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp\fortranobject.c' to sources.
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp' to include_dirs.
    adding 'build\src.win-amd64-3.9\pymc\gp\linalg_utils-f2pywrappers.f' to sources.
  building extension "pymc.gp.incomplete_chol" sources
  f2py options: []
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp\fortranobject.c' to sources.
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp' to include_dirs.
    adding 'build\src.win-amd64-3.9\pymc\gp\incomplete_chol-f2pywrappers.f' to sources.
  building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources
  f2py options: []
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp\cov_funs\fortranobject.c' to sources.
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp\cov_funs' to include_dirs.
    adding 'build\src.win-amd64-3.9\pymc\gp\cov_funs\isotropic_cov_funs-f2pywrappers.f' to sources.
  building extension "pymc.gp.cov_funs.distances" sources
  f2py options: []
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp\cov_funs\fortranobject.c' to sources.
    adding 'build\src.win-amd64-3.9\build\src.win-amd64-3.9\pymc\gp\cov_funs' to include_dirs.
  build_src: building npy-pkg config files
  running build_py
  creating build\lib.win-amd64-cpython-39
  creating build\lib.win-amd64-cpython-39\pymc
  copying pymc\calc_utils.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\CircularStochastic.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\CommonDeterministics.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\Container.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\datatypes.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\decorators.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\diagnostics.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\distributions.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\graph.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\InstantiationDecorators.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\Matplot.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\MCMC.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\Model.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\Node.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\NormalApproximation.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\NumpyDeterministics.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\progressbar.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\PyMCObjects.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\ScipyDistributions.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\six.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\StepMethods.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\threadpool.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\utils.py -> build\lib.win-amd64-cpython-39\pymc
  copying pymc\__init__.py -> build\lib.win-amd64-cpython-39\pymc
  creating build\lib.win-amd64-cpython-39\pymc\database
  copying pymc/database\base.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\hdf5.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\hdf5ea.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\no_trace.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\pickle.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\ram.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\sqlite.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\txt.py -> build\lib.win-amd64-cpython-39\pymc/database
  copying pymc/database\__init__.py -> build\lib.win-amd64-cpython-39\pymc/database
  creating build\lib.win-amd64-cpython-39\pymc\examples
  copying pymc/examples\custom_step.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\disaster_model.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\disaster_model_gof.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\disaster_model_linear.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\disaster_model_missing.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\disaster_model_null.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\gelman_bioassay.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\melanoma.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\melanoma_data.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\weibull_fit.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\weibull_fit_gof.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\zip.py -> build\lib.win-amd64-cpython-39\pymc/examples
  copying pymc/examples\__init__.py -> build\lib.win-amd64-cpython-39\pymc/examples
  creating build\lib.win-amd64-cpython-39\pymc\examples\gp
  copying pymc/examples/gp\basiscov.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\cov.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\covparams.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\MCMC.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\mean.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\mesh_choice.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\observation.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\PyMCmodel.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\realizations.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  copying pymc/examples/gp\__init__.py -> build\lib.win-amd64-cpython-39\pymc/examples/gp
  creating build\lib.win-amd64-cpython-39\pymc\tests
  copying pymc/tests\objectmodel.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_adaptive.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_AM.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_basiscov.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_binary_step.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_container.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_convergence.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_cov.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_database.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_distributions.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_GP_MCMC.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_gradients.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_graph.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_instantiation.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_interactive.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_MCMCSampler.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_mean.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_missing.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_norm_approx.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_observation.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_realization.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_slice.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_special_methods.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\test_utils.py -> build\lib.win-amd64-cpython-39\pymc/tests
  copying pymc/tests\__init__.py -> build\lib.win-amd64-cpython-39\pymc/tests
  creating build\lib.win-amd64-cpython-39\pymc\gp
  copying pymc/gp\BasisCovariance.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\Covariance.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\FullRankCovariance.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\gpplots.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\GPutils.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\gp_submodel.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\Mean.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\NearlyFullRankCovariance.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\Realization.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\step_methods.py -> build\lib.win-amd64-cpython-39\pymc/gp
  copying pymc/gp\__init__.py -> build\lib.win-amd64-cpython-39\pymc/gp
  creating build\lib.win-amd64-cpython-39\pymc\gp\cov_funs
  copying pymc/gp/cov_funs\bases.py -> build\lib.win-amd64-cpython-39\pymc/gp/cov_funs
  copying pymc/gp/cov_funs\brownian.py -> build\lib.win-amd64-cpython-39\pymc/gp/cov_funs
  copying pymc/gp/cov_funs\cov_utils.py -> build\lib.win-amd64-cpython-39\pymc/gp/cov_funs
  copying pymc/gp/cov_funs\nsmatern.py -> build\lib.win-amd64-cpython-39\pymc/gp/cov_funs
  copying pymc/gp/cov_funs\wrapped_distances.py -> build\lib.win-amd64-cpython-39\pymc/gp/cov_funs
  copying pymc/gp/cov_funs\__init__.py -> build\lib.win-amd64-cpython-39\pymc/gp/cov_funs
  running build_ext
  No module named 'numpy.distutils._msvccompiler' in numpy.distutils; trying from distutils
  customize MSVCCompiler
  customize MSVCCompiler using build_ext
  CCompilerOpt.cc_test_flags[1013] : testing flags (/O2)
  error: Microsoft Visual C++ 14.0 or greater is required. Get it with "Microsoft C++ Build Tools": https://visualstudio.microsoft.com/visual-cpp-build-tools/
  CCompilerOpt.cache_flush[809] : write cache to path -> C:\Users\seanv\AppData\Local\Temp\pip-install-gwnzp4qv\pymc_491ec86ffeb24d5a84f8285c865eee39\build\temp.win-amd64-cpython-39\Release\ccompiler_opt_cache_ext.py
  [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: legacy-install-failure

Encountered error while trying to install package.

pymc

note: This is an issue with the package mentioned above, not pip.
hint: See above for output from the failure.

Op do 5 jan. 2023 om 18:30 schreef Sean van Mil <seanv...@gmail.com>:

Fengler, Alexander

unread,

Jan 11, 2023, 12:04:06 PM1/11/23

to hddm-...@googlegroups.com

Hi Sean,

two things to check as a first pass.

It seems you are using python 3.9, I would recommend using python 3.7 here.

Second, this error:

Microsoft Visual C++ 14.0 or greater is required.

Can you install that and retry?

Best,

Alex

To view this discussion on the web visit https://groups.google.com/d/msgid/hddm-users/CAJAoNArpp_0RqeFP0JTK9GVRDNQgtujfrkTg0odH0B%2BAPzOdmg%40mail.gmail.com.

Sean van Mil

unread,

Jan 12, 2023, 6:49:57 AM1/12/23

to hddm-users

Hi Alex,

Thank you for getting back to me. In the meantime, I made some progress, but it feels like I'm still not quite on the home stretch. For your, and other people's reference, here's the steps I took, the errors that got resolved, and what I'm running into now. I'm working on Windows 10, with Anaconda 3, and an environment with Python 3.7. I also have Microsoft Visual C++ installed, which indeed fixed one error. Here's code I'm running:

pip install cython
conda install pymc==2.3.8
pip install git+https://github.com/hddm-devs/kabuki (I am getting a WARNING here: Ignoring invalid distribution -umpy (c:\users\seanv\anaconda3\envs\hddm_1201\lib\site-packages))
Installed packages hdf5, h5py and netcdf4 from the Anaconda Navigator environment, to prevent the previously mentioned error with HDF5_DIR
pip install git+https://github.com/hddm-devs/hddm
Tried to import pandas as pd, but got an error related to numpy. So I updated my numpy version from 1.14 to 1.21.5 from Anaconda Navigator environment
Import numpy as np
Import pandas as pd (no error! Yay)
import hddm (then I got an error saying that 'gamma' from 'scipy' couldn't be imported, so I imported Scipy from the Anaconda Navigator environment)
Then when trying import hddm again, I get AttributeError where module 'pymc' has no attribute 'stochastic_from_dist'. This I think is related to pymc, so I checked whether pymc==2.3.8 was listed in conda_list, but weirdly enough it wasn't... So I went back to the Anaconda Navigator environment and tried to install pymc (2.3.8), but then I get the below mentioned error which alludes to incompatibility of versions...

So now I'm not sure why pymc was not listed in conda list even though I ran 'conda install pymc==2.3.8' in bullet point 2, and why there are so many incompatibilities when using the recommended pymcm(2.3.8) and python 3.7. Is there any update on version to use? Also, am I supposed to separately install scipy? Or should it come with some package?

Again, I've made some way, but still not there yet unfortunately...

Thanks very much for the continuous advice.

Best,

Sean

UnsatisfiableError: The following specifications were found to be incompatible with a past explicit spec that is not an explicit spec in this operation (scipy):

- pymc -> scipy

The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package vs2015_runtime conflicts for:

libxml2 -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

anyio -> python[version='>=3.9,<3.10.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

tornado -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

debugpy -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

libsodium -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

fftw -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

wheel -> python -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

zipp -> python[version='>=3.10,<3.11.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

jupyterlab_pygments -> python -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

ipython -> python[version='>=3.8,<3.9.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

libiconv -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

libxslt -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

nbconvert -> lxml -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

sqlite -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

pyrsistent -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

python=3.7 -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

pyzmq -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

intel-openmp -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.15.26706|>=14.27.29016|>=14.16.27012']

send2trash -> python -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

zlib -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

cffi -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

mkl-service -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

jupyter_server -> argon2-cffi -> vs2015_runtime[version='>=14.16.27012,<15.0a0|>=14.27.29016,<15.0a0']

markupsafe -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

pickleshare -> python[version='>=3'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

libxslt -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

jsonschema -> pyrsistent[version='!=0.17.0,!=0.17.1,!=0.17.2,>=0.14.0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

pycparser -> python[version='>=3.6'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

libxml2 -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

flit-core -> python[version='>=3.6'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

terminado -> python[version='>=3.10,<3.11.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0|>=14.27.29016,<15.0a0']

lxml -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

packaging -> python[version='>=3.7,<3.8.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

vs2015_runtime

mkl_random -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

zeromq -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

tornado -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

numpy==1.21.5 -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

python-dateutil -> python -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

pyzmq -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

pywinpty -> vs2015_runtime[version='>=14.27.29016,<15.0a0']

decorator -> python[version='>=3.5'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

importlib_resources -> python[version='>=3.6'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

prompt-toolkit -> python[version='>=3.9,<3.10.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

jinja2 -> markupsafe[version='>=2.0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

numpy-base -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

vc -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

prometheus_client -> python[version='>=3.8,<3.9.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

setuptools -> python[version='>=3.7,<3.8.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

typing-extensions -> python[version='>=3.7,<3.8.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

zlib -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

cffi -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

jupyter_core -> python[version='>=3.10,<3.11.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0|>=14.27.29016,<15.0a0']

python-fastjsonschema -> python[version='>=3.7,<3.8.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

winpty -> vc=14 -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

python=3.7 -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

debugpy -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.15.26706|>=14.27.29016|>=14.16.27012']

mkl_fft -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

scipy -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.15.26706|>=14.27.29016|>=14.16.27012']

backcall -> python -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

pyrsistent -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.15.26706|>=14.27.29016|>=14.16.27012']

pymc -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

sqlite -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

ipykernel -> debugpy[version='>=1.0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

webencodings -> python[version='>=3.10,<3.11.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

parso -> python[version='>=3.6'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

intel-openmp -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

pip -> python[version='>=3.7,<3.8.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

pywin32 -> vs2015_runtime[version='>=14.16.27012,<15.0a0|>=14.27.29016,<15.0a0']

beautifulsoup4 -> python[version='>=3.10,<3.11.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

soupsieve -> python[version='>=3.9,<3.10.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

pandocfilters -> python[version='!=3.0,!=3.1,!=3.2,!=3.3'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

importlib-metadata -> python[version='>=3.7,<3.8.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

zeromq -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

mkl_fft -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

wincertstore -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.15.26706|>=14.27.29016|>=14.16.27012']

six -> python -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

wcwidth -> python -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

numpy==1.21.5 -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.15.26706|>=14.27.29016|>=14.16.27012']

pygments -> python[version='>=3.5'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

pkgutil-resolve-name -> python[version='>=3.7,<3.8.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

ipython_genutils -> python -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

libsodium -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

jedi -> python[version='>=3.10,<3.11.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

hdf5 -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

attrs -> python[version='>=3.10,<3.11.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

tinycss2 -> python[version='>=3.8,<3.9.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

defusedxml -> python -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

psutil -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

argon2-cffi-bindings -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.15.26706|>=14.27.29016|>=14.16.27012']

certifi -> python[version='>=3.7,<3.8.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

entrypoints -> python[version='>=3.10,<3.11.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

mkl-service -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

argon2-cffi -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

openssl -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

hdf5 -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

importlib_metadata -> python[version='>=3.6,<3.7.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

numpy-base -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

libiconv -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

mkl_random -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

notebook -> argon2-cffi -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

mkl -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

jupyter_client -> python[version='>=3.9,<3.10.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0|>=14.27.29016,<15.0a0']

argon2-cffi-bindings -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

websocket-client -> python[version='>=3.10,<3.11.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

idna -> python[version='>=3.8,<3.9.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

sniffio -> python[version='>=3.10,<3.11.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

nest-asyncio -> python[version='>=3.7,<3.8.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

pywin32 -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

fftw -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

bleach -> python[version='>=3.6'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

wincertstore -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

nbclassic -> argon2-cffi -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

notebook-shim -> python[version='>=3.8,<3.9.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

matplotlib-inline -> python[version='>=3.10,<3.11.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

typing_extensions -> python[version='>=3.7,<3.8.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

lxml -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

pymc -> python[version='>=3.6,<3.7.0a0'] -> vs2015_runtime[version='>=14.15.26706|>=14.27.29016|>=14.16.27012']

mkl -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.15.26706|>=14.27.29016|>=14.16.27012']

mistune -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

colorama -> python[version='>=3.8,<3.9.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

scipy -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

openssl -> vc[version='>=14.1,<15.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

argon2-cffi -> python[version='>=3.6'] -> vs2015_runtime[version='>=14.15.26706|>=14.27.29016|>=14.16.27012']

mistune -> python -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.27.29016|>=14.16.27012']

markupsafe -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

nbformat -> python[version='>=3.8,<3.9.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

psutil -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

pywinpty -> python[version='>=3.8,<3.9.0a0'] -> vs2015_runtime[version='>=14.0.25123,<15.0a0|>=14.0.25420|>=14.15.26706|>=14.16.27012,<15.0a0|>=14.27.29016|>=14.16.27012']

traitlets -> python[version='>=3.10,<3.11.0a0'] -> vs2015_runtime[version='>=14.16.27012,<15.0a0']

...... etc. etc.

Op woensdag 11 januari 2023 om 17:04:06 UTC schreef alexande...@brown.edu:

Leyla Khenissi

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Jan 12, 2023, 7:08:28 AM1/12/23

to hddm-...@googlegroups.com

Hi Sean,

I followed a similar path to you. In the end, I got HDDM to work only on the terminal in a python 3.7 environment and failed on the anaconda spyder interface.

Best,

Leyla

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Sean van Mil

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Jan 12, 2023, 7:42:20 AM1/12/23

to hddm-users

Hi Leyla,

Ah, that's disconcerting and good to know at the same time! Do you have any notes on which steps you took and which packages you installed?

Also, do you then run the whole DDM in the terminal? Or can you at some point work with it in Jupyter Notebook once you've installed and imported all the necessary packages from the terminal?

Thanks,

Sean

Op donderdag 12 januari 2023 om 12:08:28 UTC schreef Leyla:

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