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anima...@gmail.com
,
Thomas Kluyver
2
6/19/23
How to store really large python bytes string into dataset
Hi Prashant, This Google group has been closed in favour of the h5py board on the HDF forum: https://
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How to store really large python bytes string into dataset
Hi Prashant, This Google group has been closed in favour of the h5py board on the HDF forum: https://
6/19/23
Thomas Kluyver
12/2/20
Moving h5py discussion to HDF Forum
TL;DR: go to https://forum.hdfgroup.org/c/hdf-tools/h5py It came up a few months ago that Google
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Moving h5py discussion to HDF Forum
TL;DR: go to https://forum.hdfgroup.org/c/hdf-tools/h5py It came up a few months ago that Google
12/2/20
Christian Labrecque
,
Thomas Kluyver
2
12/2/20
buid wheels error
Hi Christian, That looks like it's not the real error, it's just informing you that there was
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buid wheels error
Hi Christian, That looks like it's not the real error, it's just informing you that there was
12/2/20
Thomas Kluyver
11/6/20
h5py 3.1 release
I've just published h5py 3.1. The changes from 3.0 are fairly minor, but it fixes several
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h5py 3.1 release
I've just published h5py 3.1. The changes from 3.0 are fairly minor, but it fixes several
11/6/20
Thomas Kluyver
10/30/20
h5py 3.0 release
I'm pleased to say that h5py 3.0 is now available on PyPI. This release brings a lot of
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h5py 3.0 release
I'm pleased to say that h5py 3.0 is now available on PyPI. This release brings a lot of
10/30/20
Thomas Kluyver
2
10/20/20
h5py 3.0 RC1
I'm trying to wait for the final release until we can use Azure to build wheels for Python 3.9.
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h5py 3.0 RC1
I'm trying to wait for the final release until we can use Azure to build wheels for Python 3.9.
10/20/20
Ray Osborn
, …
Thomas Kluyver
9
10/15/20
String datasets in h5py 3.0rc1
I've made a PR to describe the incompatibility more clearly in the h5py 3.0 release notes: https:
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String datasets in h5py 3.0rc1
I've made a PR to describe the incompatibility more clearly in the h5py 3.0 release notes: https:
10/15/20
Jinghan Sun
,
Thomas Kluyver
3
10/7/20
HDF5 data corruption issues after a crash?
Hi Thomas, Thank you so much! The crashes I emulated belong to the second case. I will also contact
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HDF5 data corruption issues after a crash?
Hi Thomas, Thank you so much! The crashes I emulated belong to the second case. I will also contact
10/7/20
Utpal Kanti Mukhopadhyay
10/2/20
How to read multiple .hdf files from a directory?
Dear Users of h5py, I have defined a function that takes a .hdf file from a user-defined path and
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How to read multiple .hdf files from a directory?
Dear Users of h5py, I have defined a function that takes a .hdf file from a user-defined path and
10/2/20
Thomas Kluyver
9/29/20
Alternative to Google Groups?
I'm told that Google Groups is still not easily accessible for people in China, so it's worth
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Alternative to Google Groups?
I'm told that Google Groups is still not easily accessible for people in China, so it's worth
9/29/20
Thomas Kluyver
9/28/20
Approaching h5py 3.0
Hi all, I think we're getting close to having h5py 3.0 ready. There are a couple more changes to
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Approaching h5py 3.0
Hi all, I think we're getting close to having h5py 3.0 ready. There are a couple more changes to
9/28/20
Claudio Cimarelli
, …
Thomas Kluyver
8
9/25/20
[BUG] Wrong values from first read of Dataset, correct on second read
OK, that implies that either it was compiled without pread support, or there's another similar
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[BUG] Wrong values from first read of Dataset, correct on second read
OK, that implies that either it was compiled without pread support, or there's another similar
9/25/20
G
, …
Valentyn Stadnytskyi
4
8/21/20
Column names for an HDF5 File
Hello, I am trying to create an hdf5 file on a server drive mounted with autofs /net/control/mnt/.
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Column names for an HDF5 File
Hello, I am trying to create an hdf5 file on a server drive mounted with autofs /net/control/mnt/.
8/21/20
Edis Jakupovic
,
Thomas Kluyver
2
8/13/20
Can you retrieve MPI.Comm object from an h5py.File instance?
I think what h5py gives back is essentially a copy of the comm (from MPI_Comm_dup) - see the code
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Can you retrieve MPI.Comm object from an h5py.File instance?
I think what h5py gives back is essentially a copy of the comm (from MPI_Comm_dup) - see the code
8/13/20
Donald Ellis
, …
Thomas Kluyver
5
8/13/20
Is h5py visit and visititems broken?
Thanks, That clears things up. On Tuesday, August 11, 2020 at 4:42:54 PM UTC-4, Donald Ellis wrote:
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Is h5py visit and visititems broken?
Thanks, That clears things up. On Tuesday, August 11, 2020 at 4:42:54 PM UTC-4, Donald Ellis wrote:
8/13/20
mersenne zwirn
8/10/20
Implicit fork() while loading h5py
h5py seems to do an implicit fork() while being loaded; this conflicts with loaded mpi4py module.
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Implicit fork() while loading h5py
h5py seems to do an implicit fork() while being loaded; this conflicts with loaded mpi4py module.
8/10/20
Thomas Kluyver
2
8/7/20
Virtual sprint this weekend
This was fairly productive last weekend, and we're going to try to repeat it this weekend.
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Virtual sprint this weekend
This was fairly productive last weekend, and we're going to try to repeat it this weekend.
8/7/20
Alan Robinson
,
Thomas Kluyver
2
8/3/20
f1['big'] notation in "Python and HDF5" book
Hi Alan, You can think of an HDF5 file as a dictionary containing arrays. This f['name']
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f1['big'] notation in "Python and HDF5" book
Hi Alan, You can think of an HDF5 file as a dictionary containing arrays. This f['name']
8/3/20
THANAPONG LIKHITPARINYA
,
Ken Walker
2
7/13/20
What does this schematic diagram means?
The first (partial) paragraph explains the structure. Your interpretation is basically correct. This
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What does this schematic diagram means?
The first (partial) paragraph explains the structure. Your interpretation is basically correct. This
7/13/20
Sal Abbasi
, …
Thomas Kluyver
6
7/3/20
Error: Blosc library does not have support for the 'snappy' compressor, but only for: blosclz,lz4,lz4hc,zlib,zstd
Will do. Thanks for the help. On Friday, July 3, 2020 at 9:45:41 AM UTC-5, Thomas Kluyver wrote: On
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Error: Blosc library does not have support for the 'snappy' compressor, but only for: blosclz,lz4,lz4hc,zlib,zstd
Will do. Thanks for the help. On Friday, July 3, 2020 at 9:45:41 AM UTC-5, Thomas Kluyver wrote: On
7/3/20
Catherine.M.Moroney
,
Thomas Kluyver
2
7/1/20
check_string_dtype not in my version of h5py
Hi Catherine, It was added in 2.10. There's an 'Older API' heading in the docs
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check_string_dtype not in my version of h5py
Hi Catherine, It was added in 2.10. There's an 'Older API' heading in the docs
7/1/20
Arnaldo Leon
,
Thomas Caswell
3
6/27/20
Fixing valgrid errors by setting INIT_HTAB=1
Hi Tom, I believe the author of LZF was trying to squeeze some performance by not having to
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Fixing valgrid errors by setting INIT_HTAB=1
Hi Tom, I believe the author of LZF was trying to squeeze some performance by not having to
6/27/20
Marco Inchingolo
,
Thomas Caswell
2
6/26/20
Reading multiple hdf5 files mounted on remote folder
Marco, libhdf5 requires that the filesystem be posix compliant (the key thing is that once a low
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Reading multiple hdf5 files mounted on remote folder
Marco, libhdf5 requires that the filesystem be posix compliant (the key thing is that once a low
6/26/20
Valentyn Stadnytskyi
, …
Jérôme Kieffer
10
6/9/20
corrupted hdf5 file
On Tue, 9 Jun 2020 09:56:24 -0400 Valentyn Stadnytskyi <v.stad...@gmail.com> wrote: > I
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corrupted hdf5 file
On Tue, 9 Jun 2020 09:56:24 -0400 Valentyn Stadnytskyi <v.stad...@gmail.com> wrote: > I
6/9/20
Adam Insanoff
, …
Stan West
10
5/20/20
Continuously record time series compound data using h5py
Thank you very much, Stan, for the answer. Seems to be a more efficient way of temporarily storing
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Continuously record time series compound data using h5py
Thank you very much, Stan, for the answer. Seems to be a more efficient way of temporarily storing
5/20/20
Thomas Vincent
, …
Thomas Kluyver
9
5/18/20
hdf5plugin 2.0 beta version providing blosc, bitshuffle and lz4 compression filters for h5py
Dear all, We recently made a new release of hdf5plugin (v2.3.0) to provide additional compression
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hdf5plugin 2.0 beta version providing blosc, bitshuffle and lz4 compression filters for h5py
Dear all, We recently made a new release of hdf5plugin (v2.3.0) to provide additional compression
5/18/20
Thomas Kluyver
5/6/20
The road to h5py 3.0
Hi all, While many of us are stuck at home, I'm hoping we can get h5py version 3 out. This is due
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The road to h5py 3.0
Hi all, While many of us are stuck at home, I'm hoping we can get h5py version 3 out. This is due
5/6/20
Jason Greenlaw - NOAA Affiliate
2
4/29/20
Cython errors when compiling h5py with pip
And of course 10 minutes after I posted this, I found the GitHub issue about it: https://github.com/
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Cython errors when compiling h5py with pip
And of course 10 minutes after I posted this, I found the GitHub issue about it: https://github.com/
4/29/20
Brad Aagaard
,
Thomas Kluyver
3
4/22/20
h5py configuration: HDF5 dir versus specification of HDF5 lib and include directories
Thanks for pointing me to the PR. This includes the features I want, and I added my use case as a
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h5py configuration: HDF5 dir versus specification of HDF5 lib and include directories
Thanks for pointing me to the PR. This includes the features I want, and I added my use case as a
4/22/20
Trygve Aspenes
,
Thomas Kluyver
4
4/15/20
Is visititems expected to harvest hardlink?
If I've understood HDF5 correctly, then in your example, it's not one dataset and one hard
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Is visititems expected to harvest hardlink?
If I've understood HDF5 correctly, then in your example, it's not one dataset and one hard
4/15/20