gsea error .. how can i solve this problem?

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kkg

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Apr 10, 2018, 5:54:53 AM4/10/18
to gsea-help
i'm new at GSEA
when i run gsea, error appeared.
i add error message below 


how can i solve this problem?




<Error Details>

---- Full Error Message ----
Control channel unexpectedly closed ('' read so far)

---- Stack Trace ----
# of exceptions: 1
------Control channel unexpectedly closed ('' read so far)------
com.enterprisedt.net.ftp.ControlChannelIOException: Control channel unexpectedly closed ('' read so far)
at com.enterprisedt.net.ftp.FTPControlSocket.readLine(FTPControlSocket.java:1058)
at com.enterprisedt.net.ftp.FTPControlSocket.readReply(FTPControlSocket.java:1088)
at com.enterprisedt.net.ftp.FTPControlSocket.validateConnection(FTPControlSocket.java:444)
at com.enterprisedt.net.ftp.FTPControlSocket.<init>(FTPControlSocket.java:410)
at com.enterprisedt.net.ftp.FTPControlSocket.<init>(FTPControlSocket.java:381)
at com.enterprisedt.net.ftp.FTPClient.connect(FTPClient.java:1037)
at com.enterprisedt.net.ftp.FileTransferClient.connect(FileTransferClient.java:424)
at edu.mit.broad.genome.io.FtpSingleUrlTransferCommand.initClient(FtpSingleUrlTransferCommand.java:89)
at edu.mit.broad.genome.io.FtpSingleUrlTransferCommand.<init>(FtpSingleUrlTransferCommand.java:45)
at xtools.api.param.GeneSetMatrixChooserAbstractParam._getObjects(GeneSetMatrixChooserAbstractParam.java:115)
at xtools.api.param.GeneSetMatrixChooserAbstractParam._getGeneSets(GeneSetMatrixChooserAbstractParam.java:182)
at xtools.api.param.GeneSetMatrixChooserAbstractParam.getGeneSetMatrixCombo(GeneSetMatrixChooserAbstractParam.java:77)
at xtools.api.param.GeneSetMatrixMultiChooserParam.getGeneSetMatrixCombo(GeneSetMatrixMultiChooserParam.java:15)
at xtools.gsea.Gsea.execute(Gsea.java:107)
at edu.mit.broad.xbench.tui.TaskManager$ToolRunnable.run(TaskManager.java:436)
at java.base/java.lang.Thread.run(Unknown Source)


David Eby

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Apr 10, 2018, 9:32:22 PM4/10/18
to gsea-help
Hi,

This looks like a problem trying to reach our FTP servers, possibly a network issue at your site.  Some IT departments block FTP at the wirewall for security reasons; we're hoping to move away from FTP in a future release for that reason.

For now, you can work around it by downloading the MSigDB GMTs and/or CHIP annotation files directly from our website.  Just supply the files through the Load Data screen along with your dataset files.

That will allow you to run independent of the FTP servers.  The disadvantage is that you won't automatically see any updates, so check back to our website or Twitter feed for new announcements.

Regards,
David

David Eby
Consultant
Cancer Informatics Development
Broad Institute of MIT and Harvard
415 Main St, Cambridge, MA 02142, USA
http://www.broadinstitute.org/cancer
http://www.gsea-msigdb.org
https://twitter.com/GSEA_MSigDB
https://twitter.com/GenePattern
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