Enrichment map error

[William Chao]

hi guys,

 I met a problem while running the enrichment map since I selected the previous result of GESA and built the enrichment map. It pops out the message saying " internal server error". How should I solve this issue? I tried to use Cytoscape - an enrichment map the generate the figure but I faced another issue that contain garbled text. Please help me to figure out the problem, thank you, guys.

[Anthony Castanza]

Hi William,

It appears that there is a formatting error with the .txt.file you selected there, could you perhaps navigate to the file, open it in a plain text editor and send us a screenshot?

Alternatively you might try loading the data in from the EnrichmentMap menu from within CytoScape directly rather than using the connection from the GSEA application which can encounter occasional bugs as if EnrichmentMap has made API changes on their end.

See the instructions here: https://enrichmentmap.readthedocs.io/en/latest/QuickTour.html

-Anthony

Anthony S. Castanza, PhD
Curator, Molecular Signatures Database
Mesirov Lab, Department of Medicine
University of California, San Diego

On Thu, Oct 13, 2022, 8:34 PM William Chao <asq257...@gmail.com> wrote:

hi guys,

 I met a problem while running the enrichment map since I selected the previous result of GESA and built the enrichment map. It pops out the message saying " internal server error". How should I solve this issue? I tried to use Cytoscape - an enrichment map the generate the figure but I faced another issue that contain garbled text. Please help me to figure out the problem, thank you, guys.

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