Re: [gsea-help] Inquiry about the use of KEGG pathway in GSRA analysis

[Anthony Castanza]

Hi Itsuki,

Unfortunately due  to KEGG licensing restrictions we are unable to provide access to a full current version of KEGG. KEGG Legacy represents a snapshot of KEGG from before the licensing terms changed. KEGG Medicus represents the medical research-centric subset of KEGG that is released under open licensing terms. My recommendation would be to use the KEGG Medicus collection for your use case. Sorry we can't be of more help here, this is unfortunately something that is out of our hands.

-Anthony

Anthony S. Castanza, PhD

Curator, Molecular Signatures Database

Mesirov Lab, Department of Medicine

University of California, San Diego

On Thu, Nov 9, 2023 at 6:51 AM Itsuki Osawa <osawa....@gmail.com> wrote:

Hi, 

I am Itsuki Osawa, a postdoctoral research fellow at Columbia University. I am trying to elucidate key pathways using GSEA in our snRNA-seq cohort. To find signal transductions I am most interested in, I am considering to use KEGG pathway (https://www.genome.jp/kegg/pathway.html). Could you please tell me how to use KEGG pathway instead of KEGG_medius or KEGG_legacy? Thank you in advance.

Best,

Itsuki

--
You received this message because you are subscribed to the Google Groups "gsea-help" group.
To unsubscribe from this group and stop receiving emails from it, send an email to gsea-help+...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/gsea-help/3eff44cb-edd6-43a5-8a3f-5a8e8d44d082n%40googlegroups.com.