get GO terms numbers

[Theo]

Hi all, Anthony,

So, after running the GSEA using the windows software is there a way to get the GO:XXXXXXX numbers from the results? If I am not mistaken I am only using the names.

It seems that I can only get this from going to the gsea_report_.html then clicking on the name of the geneset that sill take me to the msigdb page. it only resides there.
I would like to use some clustering tools like QuickGO or simplifyEnrichment, but those only accept the GO numbering system.
Thank you

[Anthony Castanza]

Hi Theo,

We provide json formatted versions of MSigDB gene sets on our downloads page that have all this extra information, you would need to extract the set name to exact source mappings from this file

-Anthony

Anthony S. Castanza, PhD
Curator, Molecular Signatures Database
Mesirov Lab, Department of Medicine
University of California, San Diego

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