Parsing trouble for input string

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Kika Sucharov

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Aug 15, 2025, 6:11:51 PMAug 15
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I am trying to upload a file to GSEA. I get the following message:

 

<Error Details>

 

---- Full Error Message ----

There were errors: ERROR(S) #:1

Parsing trouble

java.lang.NumberFormatException: For input string: "#DESCRIPTI ...

 

---- Stack Trace ----

# of exceptions: 1

------For input string: "#DESCRIPTION"------

java.lang.NumberFormatException: For input string: "#DESCRIPTION"

                at java.base/jdk.internal.math.FloatingDecimal.readJavaFormatString(Unknown Source)

                at java.base/jdk.internal.math.FloatingDecimal.parseFloat(Unknown Source)

                at java.base/java.lang.Float.parseFloat(Unknown Source)

                at org.gsea_msigdb.gsea/edu.mit.broad.genome.parsers.AbstractParser.parseStringToFloat(AbstractParser.java:250)

                at org.gsea_msigdb.gsea/edu.mit.broad.genome.parsers.AbstractParser.parseFieldsIntoFloatArray(AbstractParser.java:361)

                at org.gsea_msigdb.gsea/edu.mit.broad.genome.parsers.AbstractParser.parseTextMatrixToDataset(AbstractParser.java:277)

                at org.gsea_msigdb.gsea/edu.mit.broad.genome.parsers.TxtDatasetParser.parse(TxtDatasetParser.java:108)

                at org.gsea_msigdb.gsea/edu.mit.broad.genome.parsers.ParserFactory.readDatasetTXT(ParserFactory.java:201)

                at org.gsea_msigdb.gsea/edu.mit.broad.genome.parsers.ParserFactory.read(ParserFactory.java:759)

                at org.gsea_msigdb.gsea/edu.mit.broad.genome.parsers.ParserFactory.read(ParserFactory.java:736)

                at org.gsea_msigdb.gsea/edu.mit.broad.genome.parsers.ParserWorker.doInBackground(ParserWorker.java:53)

                at java.desktop/javax.swing.SwingWorker$1.call(Unknown Source)

                at java.base/java.util.concurrent.FutureTask.run(Unknown Source)

                at java.desktop/javax.swing.SwingWorker.run(Unknown Source)

                at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)

                at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)

                at java.base/java.lang.Thread.run(Unknown Source)

 

I tried deleting column B (description). However, I then get the same error message from the new column B (TOR132684_male_NF). I attached the file. Any idea what could be causing it?

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