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Marcia Maldonado

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May 9, 2025, 2:10:26 PM5/9/25
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Hi,

I just started learning how to use GSEA. I finally have the files uploaded but when I click run I get the following error message:

>> {zip_report=false, num=100, scoring_scheme=weighted, norm=meandiv, out=C:\Users\marmaldo\gsea_home\output\may09, mode=Max_probe, include_only_symbols=true, set_max=500, gmx=ftp.broadinstitute.org://pub/gsea/msigdb/mouse/gene_sets/m2.cp.wikipathways.v2024.1.Mm.symbols.gmt, plot_top_x=20, nperm=1000, order=descending, rnd_seed=timestamp, rpt_label=2weeks, set_min=15, res=E:\BLADDER\Diabetes Project\Mouse\Melissa's Paper\Urothelium\RNAseq\Epigenomics Data\GSEA analysis\2weeks\2weeks.txt, chip=ftp.broadinstitute.org://pub/gsea/msigdb/mouse/annotations/Mouse_ILLUMINA_Array_MSigDB.v2024.1.Mm.chip, create_svgs=false, cls=E:\BLADDER\Diabetes Project\Mouse\Melissa's Paper\Urothelium\RNAseq\Epigenomics Data\IPA analysis\2weeks\Class3.cls#STZ_versus_CTR, sort=real, create_gcts=false, save_rnd_lists=false, median=false, metric=Signal2Noise, make_sets=true, rnd_type=no_balance, gui=false, permute=gene_set, collapse=Collapse}
# of elements = 1
E:\BLADDER\Diabetes Project\Mouse\Melissa's Paper\Urothelium\RNAseq\Epigenomics Data\IPA analysis\2weeks\Class3.cls#STZ_versus_CTR 

not sure what to do. Can anyone help?

Thanks
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