finding interaction pathway of a gene

[Amara]

hello
can anybody tell me if there is any datbase or website from where i
can check interaction pathway of a gene

[Sebastien Carrere]

Hi Amara,

Did you have a look to : http://string.embl.de ?
There's a lot of interaction type referenced in this database.

For specific metabolic pathways, Kegg database is the
reference:http://www.genome.ad.jp/kegg/

Sebastien

[Michaela Gündel]

Hi Amara,

I am not a specialist in pathways, but you can check the sources mentioned
here: http://www.biopax.org/ or try www.wikipathways.org maybe.

Ciao
Michaela

--
Time is the best teacher, but unfortunately, it kills all of its students.
- Robin Williams

[Fred]

Hello Amara,

You will find a list of website related to pathways at the following
page:
http://www.bioinformatics.fr/bioinformatics.php?subsection=Pathways&topics=databases

Personally, I am used to use KEGG (http://www.genome.ad.jp/kegg/).
Let's say that you are interested in a given gene AKT1.
You can have the webpage of all the pawthays where AKT1 is involved
with the following url:
http://www.genome.ad.jp/dbget-bin/www_bget?hsa+207
in this url :
-hsa stands for Homo Sapiens
-207 is the "Entrez Gene" Id of the Gene.

Hope this helps,

Fred

[priya dharsini]

KEGG database ill provide the information about pathways