Highlighting exons in Genbank files

[sbau...@gmail.com]

Hello everybody,
I would like to highlight exons and UTRs in Genbank files of genomic
sequence correponding to genes of interest. I don't know how to do it,
futhermore I am not a programmer, so if any of you know a friendly
user web interface to do it, please let me know.
Thanks in advance,
Sylvain

[Ana Kozomara]

Dear Sylvain.
Have you heard of Apollo genome browser?
It is a wonderful open source tool (made in Sanger institute), and I
think you should be able to solve your problem by using it.
But, that is not a web interface and you have to install in on your computer.
Afterwords, you can load your Genebank file in it.

Hope this helps,
have a nice day,
Ana

[Ana Kozomara]

And here is the link to Apollo home page with doc pages and
installation procedure:
http://apollo.berkeleybop.org/current/index.html

Ana

[Mikhail Fursov]

Hi Sylvain,
You can try free UGENE browser. It's optimized to work with large files.
Check this page for screen shots: http://ugene.unipro.ru/manual/adv_pan_view.html

Mikhail.

--
Mikhail Fursov

[BAULANDE Sylvain 211527 Partnerchip]

Thank you very much Ana and Mikhail !

I will try these tools very soon.

Sylvain

 

Sylvain Baulande, PhD

PartnerChip

Genopole Campus 2 (Bat G2)

2, rue Gaston Crémieux

91000 EVRY - FRANCE

tel : + 33 1 60 87 34 87

email : sylvain....@cea.fr

 

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De : group4bioi...@googlegroups.com [mailto:group4bioi...@googlegroups.com] De la part de Mikhail Fursov
Envoyé : mardi 24 mars 2009 11:01
À : group4bioi...@googlegroups.com
Objet : Re: Highlighting exons in Genbank files