installation problem: module missing

[Michel Moser]

Dear GRIT developer

I would like to run GRIT on a de novo assembly with available RNA-seq data to compare its output with cufflinks and maker2. 

After installing all named dependencies and running:

$ python setup.py build_ext --inplace"

$ python setup.py install

i tried to execute the bin/run_grit.py

unfortunately, i get an error back, which tells me that sparsify_support_fns package is missing. 

from sparsify_support_fns import calc_lhd, calc_gradient, calc_hessian

ImportError: No module named sparsify_support_fns

Could you point me to where to find this package?

Thank you, 

Michel 

[Nathan Boley]

Dear Michael,

> I would like to run GRIT on a de novo assembly with available RNA-seq data
> to compare its output with cufflinks and maker2.

Sorry, it looks like I forgot to update the README when I released
version 1.1.0. sparsity_support_fns is a cython module that should be
compiled during installation. Now, you can install GRIT using
easy_install. e.g.

easy_install GRIT-1.1.0.tar.gz

I'll update the README.

Thanks for the bug report.

Best, Nathan