GRIT

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11/20/15

GRIT-1.1.3 errors when running GRIT_example

Hi Nathan, I installed GRIT-1.1.3 on our cluster (CentOS 6.1, python 2.7.2). I tested the program

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GRIT-1.1.3 errors when running GRIT_example

Hi Nathan, I installed GRIT-1.1.3 on our cluster (CentOS 6.1, python 2.7.2). I tested the program

11/20/15

Fabian Buske, … Nathan Boley4

6/22/15

Numpy issue and bugfix when installing GRIT v1.1.2

Hi Chris, I'm experiencing this exact problem while trying to build version 2.0.4. Should I use

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Numpy issue and bugfix when installing GRIT v1.1.2

Hi Chris, I'm experiencing this exact problem while trying to build version 2.0.4. Should I use

6/22/15

Ferdinand Marlétaz

6/10/15

Hi - I am attempting to use GRIT to build gene models for the genome an alternative model system in

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Hi - I am attempting to use GRIT to build gene models for the genome an alternative model system in

6/10/15

Rui Li, Nathan Boley3

4/8/15

http://grit-bio.org website down?

Thank you for the reply. Really appreciated it. Rui On Wednesday, April 8, 2015 at 10:48:48 AM UTC-7,

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http://grit-bio.org website down?

Thank you for the reply. Really appreciated it. Rui On Wednesday, April 8, 2015 at 10:48:48 AM UTC-7,

4/8/15

Husna Nugrahapraja, Nathan Boley3

3/24/15

GRIT for Single End Reads RNA-seq

Dear Nathan, Thanks for your response! I really appreciate it. I pretty much interested with element

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GRIT for Single End Reads RNA-seq

Dear Nathan, Thanks for your response! I really appreciate it. I pretty much interested with element

3/24/15

nirmala...@gmail.com

2/5/15

GRIT errors and questions

Hi Nathan, 1. I am trying to run GRIT with paired-end RNAseq from post-mortem brain tissue data but

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GRIT errors and questions

Hi Nathan, 1. I am trying to run GRIT with paired-end RNAseq from post-mortem brain tissue data but

2/5/15

nirmala...@gmail.com, Nathan Boley11

1/20/15

request for output files

The versions I am using are listed below: numpy-1.9.1 scipy-0.15.0b1 Regards, Nirmala On Friday,

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request for output files

The versions I am using are listed below: numpy-1.9.1 scipy-0.15.0b1 Regards, Nirmala On Friday,

1/20/15

Chia-Yi Cheng, Nathan Boley3

11/4/14

to generate a control file

Dear Nathan, Thanks for your response. The format was clear and I was more curious to know if manual

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to generate a control file

Dear Nathan, Thanks for your response. The format was clear and I was more curious to know if manual

11/4/14

9/16/14

GRIT installed ok, test tutorial doesn't run

Hi, I installed GRIT 1.1.3 on Python 2.7.6, on a Centos 5 system. The installation went fine, with no

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GRIT installed ok, test tutorial doesn't run

Hi, I installed GRIT 1.1.3 on Python 2.7.6, on a Centos 5 system. The installation went fine, with no

9/16/14

Vikas Bansal, njster3

9/5/14

GRIT-1.1.3 - TypeError: object of type 'generator' has no len()

Hi! I just wonder if there is another way to solve this problem? I work on our company's cluster

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GRIT-1.1.3 - TypeError: object of type 'generator' has no len()

Hi! I just wonder if there is another way to solve this problem? I work on our company's cluster

9/5/14

Bin Wang, Nathan Boley3

5/15/14

Help please, strange error message

Dear Bin, > I only have paired RNAseq data, when I tried: > run_grit.py -v --rnaseq-reads

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Help please, strange error message

Dear Bin, > I only have paired RNAseq data, when I tried: > run_grit.py -v --rnaseq-reads

5/15/14

Ben Fulton, Nathan Boley3

5/2/14

Reference file?

There are several lines in that file that lack transcript_id's. I removed those and I got a

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Reference file?

There are several lines in that file that lack transcript_id's. I removed those and I got a

5/2/14

piroyon00, Nathan Boley4

4/11/14

SyntaxError f_matrix.py line 519 while installation

Dear Nathan, Thank you for your quick response. I'll install python 2.7. Thanks again for your

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SyntaxError f_matrix.py line 519 while installation

Dear Nathan, Thank you for your quick response. I'll install python 2.7. Thanks again for your

4/11/14

lifan...@gmail.com, … Nathan Boley5

4/1/14

date suited for GRIT

Dear Michel, > I am also working with a non-model species (plant) and possess only stranded >

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date suited for GRIT

Dear Michel, > I am also working with a non-model species (plant) and possess only stranded >

4/1/14

3/25/14

Version 1.1.2 Beta has been released

I've posted a beta release of Version 1.1.2 to the website. In addition to some minor bug fixes,

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Version 1.1.2 Beta has been released

I've posted a beta release of Version 1.1.2 to the website. In addition to some minor bug fixes,

3/25/14

Georgi Marinov, Nathan Boley3

3/20/14

[cc-ing list] > python /usr/bin/run_grit.py --threads 8 --rnaseq-read-type backward > --rnaseq-

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[cc-ing list] > python /usr/bin/run_grit.py --threads 8 --rnaseq-read-type backward > --rnaseq-

3/20/14

Michel Moser, Nathan Boley2

3/18/14

installation problem: module missing

Dear Michael, > I would like to run GRIT on a de novo assembly with available RNA-seq data > to

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installation problem: module missing

Dear Michael, > I would like to run GRIT on a de novo assembly with available RNA-seq data > to

3/18/14

9/5/13

GRIT Website and initial release

GRIT version 0.1.1 is now available at grit-bio.org

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GRIT Website and initial release

GRIT version 0.1.1 is now available at grit-bio.org

9/5/13

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