GRIT

Hi Nathan, I installed GRIT-1.1.3 on our cluster (CentOS 6.1, python 2.7.2). I tested the program

Hi Chris, I'm experiencing this exact problem while trying to build version 2.0.4. Should I use

Hi - I am attempting to use GRIT to build gene models for the genome an alternative model system in

Thank you for the reply. Really appreciated it. Rui On Wednesday, April 8, 2015 at 10:48:48 AM UTC-7,

Dear Nathan, Thanks for your response! I really appreciate it. I pretty much interested with element

Hi Nathan, 1. I am trying to run GRIT with paired-end RNAseq from post-mortem brain tissue data but

The versions I am using are listed below: numpy-1.9.1 scipy-0.15.0b1 Regards, Nirmala On Friday,

Dear Nathan, Thanks for your response. The format was clear and I was more curious to know if manual

Hi, I installed GRIT 1.1.3 on Python 2.7.6, on a Centos 5 system. The installation went fine, with no

Hi! I just wonder if there is another way to solve this problem? I work on our company's cluster

Dear Bin, > I only have paired RNAseq data, when I tried: > run_grit.py -v --rnaseq-reads

There are several lines in that file that lack transcript_id's. I removed those and I got a

Dear Nathan, Thank you for your quick response. I'll install python 2.7. Thanks again for your

Dear Michel, > I am also working with a non-model species (plant) and possess only stranded >

I've posted a beta release of Version 1.1.2 to the website. In addition to some minor bug fixes,

[cc-ing list] > python /usr/bin/run_grit.py --threads 8 --rnaseq-read-type backward > --rnaseq-

Dear Michael, > I would like to run GRIT on a de novo assembly with available RNA-seq data > to

GRIT version 0.1.1 is now available at grit-bio.org