Hi,
the latest github version of GraphChi improves the performance considerably. At least connected components example application on my Macbook runs now almost two times faster than before! On pagerank the improvement is smaller, perhaps 25%, but still significant. The speedup probably varies with different graphs and apps.
The trick is that now the in-edges are loaded in parallel (I don't know why I did not do this before...).
In addition, GraphChi now allows you to cache edge data. In the configuration there is a "cachesize_mb" setting that can be used to adjust this. It can be set on command line as well. This can be useful if you have plenty of memory, otherwise it does not help much.
Please let me know if you encounter any problems.