Example of "Evaluation Method" in COMIC ?

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matt.c...@gmail.com

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Jun 29, 2018, 4:53:14 PM6/29/18
to Grand Challenges in Biomedical Image Analysis

Hi,

would anyone have a simple example showing how to set up an evaluation within COMIC?
This idea to automatically generate this from the user submissions: https://camelyon17.grand-challenge.org/evaluation/results/

I have not found anything in the Grand Challenge doc (https://grand-challenge.org/support).
From the evaluation/methods of our challenge, and the github doc (https://github.com/comic/grand-challenge.org/blob/master/docs/evaluation.rst#id1), I understand:
- we need to create a "container image" with Docker
- this "image" must read user inputs, evaluate them with respect to a reference standard,and generates a file /output/metrics.json with the data to be displayed in the Results tab of the challenge
- this image will be automatically executed after each new submission

Would anyone (especially the COMIC developers?) could provide an example of a "container image"
- how to create it?
- a simple (Python?) file to read an input and compute a score
- how to export the metrics.json file


Thanks for your help
Matt

james...@gmail.com

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Jun 29, 2018, 5:21:18 PM6/29/18
to Grand Challenges in Biomedical Image Analysis

Please take a look at our evautils library which can help you get this set up, the getting started documentation should help.

https://github.com/comic/evalutils

Any other queries please contact sup...@grand-challenge.org

matt.c...@gmail.com

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Jul 3, 2018, 9:45:46 AM7/3/18
to Grand Challenges in Biomedical Image Analysis
Sounds exactly what I am looking for, thanks!

Maybe adding this info to the main doc (https://grand-challenge.org/support) could be relevant?

Best,
Matt

James Bibi

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Sep 19, 2018, 5:34:03 AM9/19/18
to Grand Challenges in Biomedical Image Analysis
Thanks for the good ideas to bring it. I know a lot more. :)ufabet :J

ufabet...@gmail.com

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Sep 22, 2018, 5:00:09 AM9/22/18
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เมื่อ วันเสาร์ที่ 30 มิถุนายน ค.ศ. 2018 3 นาฬิกา 53 นาที 14 วินาที UTC+7, matt.c...@gmail.com เขียนว่า:

patipon garena

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Sep 27, 2018, 1:15:37 AM9/27/18
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thank you  ufabet
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