I wanted to check this out myself, but for some reason I don't have GQL support in new console of my apps.
But maybe, the new console uses the Datastore GQL, while the old version used the Python GQL. According to the docs there are a few differences, the ancestor expression is one of them:
Python GQL expression ANCESTOR IS <entity-or-key-value>
is represented in Datastore GQL as the more general expression __key__ HAS ANCESTOR <key-value>
I hope this is the reason and I didn't just add more to the confusion though. And I hope I will get the GQL options too in the Query page.