[GoFigure2-developers] MySQL 5.5

[Kishore Mosaliganti]

Is GF2 compatible with MySQL 5.5?

Kishore

[Kishore Mosaliganti]

I just updated to Ubuntu 12.04 and it naturally upgraded MySql to 5.5.

GoFigure2 compiles fine with this version of MySQL. Will update if I detect any crashes.

Kishore

[Arnaud Gelas]

Kishore,

We have already been trying with MySQL 5.5, it works fine!

The main issue is when generating installers on windows and mac; if we decide to upgrade everywhere to MySQL 5.5, all users will have to upgrade to 5.5...
Unless someone generates installers for MySQL 5.1 on Mac (10.6, 10.7) and Windows XP (32, 64 bits) and Windows 7 (32, 64 bits).

Cheers,
Arnaud

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[Kishore Mosaliganti]

Awesome! Itsbeen good for me so far. Barracuda is on MySql 5.1. I am on MySql 5.5.


Thanks guys,

Kishore

[Kishore Mosaliganti]

Hi all,

1. Master/develop branches of GF2 are crashing on my machine since my update to Ubuntu 12.04 with gcc 4.6.3 and mysql 5.5. The crash only occurs when I use single-click watershed segmentation and it has something to do with linking to the ITK libraries. Other things like merge, split are working fine. I rebuilt ITK 3.20.1 and VTK5.8 from scratch and this problem is still recurring. Two days back they worked fine. Any ideas what might be happening?

2. I also tried compiling against git master branch of ITKv4. There were some ifdefs that needed to be added to the Code/Filter/itkExtractMeshesFromLabelImageFilter  and GF2 works well. I submitted a new branch called ITKv4Integration to github. I wonder if we can merge to master and develop and follow the ITKv4 release.

Kishore

[Arnaud Gelas]

Kishore,

On 05/22/2012 08:02 PM, Kishore Mosaliganti wrote:

Hi all,

1. Master/develop branches of GF2 are crashing on my machine since my update to Ubuntu 12.04 with gcc 4.6.3 and mysql 5.5. The crash only occurs when I use single-click watershed segmentation and it has something to do with linking to the ITK libraries. Other things like merge, split are working fine. I rebuilt ITK 3.20.1 and VTK5.8 from scratch and this problem is still recurring. Two days back they worked fine. Any ideas what might be happening?

Can you track down the crash with gdb or a debugger? I don't have ubuntu to test...

2. I also tried compiling against git master branch of ITKv4. There were some ifdefs that needed to be added to the Code/Filter/itkExtractMeshesFromLabelImageFilter  and GF2 works well. I submitted a new branch called ITKv4Integration to github. I wonder if we can merge to master and develop and follow the ITKv4 release.

see the other thread on the topic. Note that before merging you'd need to validate that gofigure works as expected (not only for the segmentation).

Thanks,
Arnaud

[Kishore Mosaliganti]

Ok, can we just merge into develop. Perhaps master can wait till we are sure that there are no bugs.

$ git merge feature_ITKv4Integration
$ git branch -d feature_ITKv4Integration

Kishore

[Arnaud Gelas]

If you are sure about what you're doing:

$ git merge --no-ff feature_ITKv4Integration
$ git push origin develop

To delete the branch locally
$ git branch -d feature_ITKv4Integration

To remove the branch from github
$ git push origin :feature_ITKv4Integration

[Kishore Mosaliganti]

Hi Arnaud,

Do you know what is the role of vtkTypeRevisionMacro() and vtkCxxRevisionMacro() before the definition of a class ? It seems to cause problems in VTK 6.0 and a lot of my code has it.

Kishore