Goby 2.3.5

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Fabien Campagne

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Mar 2, 2015, 3:42:50 PM3/2/15

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We've released Goby 2.3.5.

New Features:

- Add a mode to infer sex of samples from data (tested on exome data). Useful as quality control to check the data you get checks out with respect to the what is known about the samples. See --mode infer-sex. Works faster on sorted alignments where the index is used to jump quickly to the human sex chromosome.

Bug fixes:

- Prevent AbstractAlignmentToCompactMode to print more than 10 warnings if quality scores are not available in an alignment.

- suggest-position-slices: fix a bug in that caused some slices to overlap. Found with a job with hundreds of alignments, so not common.