Install on OSX error (gnumap-3.0.2.tgz)

[alistai...@gmail.com]

Hi guys,

Having trouble doing an installation onto OSX.

Help appreciated.

/Alistair

gnumap achalk$ make 

mpic++ -DMPI_RUN -m64 -O3 -o obj/Driver.o -c src/Driver.cpp -Iinc/ -Ilib/gsl-1.14/

In file included from src/Driver.cpp:24:

In file included from inc/GenomeMem.h:26:

inc/gvector.h:1:9: warning: 'VECTOR_H' is used as a header guard here, followed by #define of a different macro [-Wheader-guard]

#ifndef VECTOR_H

        ^~~~~~~~

inc/gvector.h:2:9: note: 'VECOTR_H' is defined here; did you mean 'VECTOR_H'?

#define VECOTR_H

        ^~~~~~~~

        VECTOR_H

src/Driver.cpp:568:78: error: reference to 'lock' is ambiguous

                (*sit).second->score(gReadDenominator[rIndex],gGen,len,*gReadArray[rIndex],lock);

                                                                                           ^

src/Driver.cpp:73:17: note: candidate found by name lookup is 'lock'

pthread_mutex_t lock;

                ^

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/mutex:351:1: note: candidate found by name lookup is 'std::__1::lock'

lock(_L0& __l0, _L1& __l1)

^

src/Driver.cpp:969:11: warning: conversion from string literal to 'char *' is deprecated [-Wc++11-compat-deprecated-writable-strings]

                usage(0,"");

                        ^

[Nathan Clement]

Where did you get your version of GNUMAP from? Just trying to locate the version so I know what to fix.

Nathan

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[Dr Clement]

I think that Stanley has a fixed version.  He should be responding shortly.

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[joie....@gmail.com]

Hi Nathan, 

I have just had the same issue and wondered if there was a fix. I downloaded it here: http://bioresearch.byu.edu/gnumap/download.cgi

Thanks!

/Joie

[M. Stanley Fujimoto]

We have moved gnumap to github. We will be updating the http://dna.cs.byu.edu/gnumap/ site to reflect this soon.

You can download the latest gnumap for mac here: https://github.com/byucsl/gnumap/releases/tag/4.0_mac

and run make.

It is tested to compile on MacOS Sierra 10.12.1 and 10.12.3

[M. Stanley Fujimoto]

We have moved gnumap to github. We will be updating the http://dna.cs.byu.edu/gnumap/ site to reflect this soon.

You can download the latest gnumap for mac here: https://github.com/byucsl/gnumap/releases/tag/4.0_mac

and run make.