OverflowError: math range error

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Bejo Ropii

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Sep 24, 2021, 7:38:41 AM9/24/21
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Hi. I am performing MMPBSA calculation using 100 frames extracted from 40ns simulation (total 50 ns simulation, I used the 10-50ns range, so I extracted every 40 frame from total 4000 frames) and I got this error below. When I used 100 frames from the last 1 ns, everything went fine. Is it possible that the error was caused by the long range of frames that I used? Thank you

[INFO   ] Loading and checking parameter files for compatibility...

  File "/share/apps/amber20/miniconda/bin/gmx_MMPBSA", line 8, in <module>
    sys.exit(gmxmmpbsa())
  File "/share/apps/amber20/miniconda/lib/python3.8/site-packages/GMXMMPBSA/app.py", line 107, in gmxmmpbsa
    app.parse_output_files()
  File "/share/apps/amber20/miniconda/lib/python3.8/site-packages/GMXMMPBSA/main.py", line 1068, in parse_output_files
    ie = InteractionEntropyCalc(edata, self, self.pre + 'iteraction_entropy.dat')
  File "/share/apps/amber20/miniconda/lib/python3.8/site-packages/GMXMMPBSA/calculation.py", line 566, in __init__
    self._calculate()
  File "/share/apps/amber20/miniconda/lib/python3.8/site-packages/GMXMMPBSA/calculation.py", line 583, in _calculate
    eceint = math.exp(deint / (k * temp))
OverflowError: math range error
Error occured on rank 0.
Exiting. All files have been retained.
[warn] Epoll ADD(4) on fd 0 failed.  Old events were 0; read change was 0 (none); write change was 1 (add): Bad file descriptor

marioe911116

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Sep 24, 2021, 2:21:10 PM9/24/21
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Bejo Ropii

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Sep 25, 2021, 5:28:54 AM9/25/21
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Thank you. I think the issue is solved.
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