GBrowse enable/disable URL parameters
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Weeks, Nathan
Dec 10, 2012, 1:47:08 PM12/10/12
to he...@gmod.org
I've noticed a discrepancy between the "GBrowse Configuration/URL schema" documentation (http://gmod.org/wiki/GBrowse_Configuration/URL_schema) and GBrowse 2.52 behavior----specifically, the "enable" and "disable" parameters.
The documentation states that for "enable" and "disable", multiple tracks can be specified by specifying the track names separated by "+" or "-" characters; however, this does not appear to work:
http://soybase.org/gb2/gbrowse/gmax1.01/?enable=cgh_indel-marker_map3
Using multiple "enable" or "disable" parameters does appear to work; however:
http://soybase.org/gb2/gbrowse/gmax1.01/?enable=cgh_indel;enable=marker_map3
(the added tracks are labeled "soybean (map version 3.0)" and "fast neutron").
If this is considered to be a GBrowse bug, I can file a bug report; otherwise, if it's a documentation bug, the wiki should be updated.
Regards,
--
Nathan Weeks
IT Specialist
USDA-ARS Corn Insects and Crop Genetics Research Unit
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The documentation states that for "enable" and "disable", multiple tracks can be specified by specifying the track names separated by "+" or "-" characters; however, this does not appear to work:
http://soybase.org/gb2/gbrowse/gmax1.01/?enable=cgh_indel-marker_map3
Using multiple "enable" or "disable" parameters does appear to work; however:
http://soybase.org/gb2/gbrowse/gmax1.01/?enable=cgh_indel;enable=marker_map3
(the added tracks are labeled "soybean (map version 3.0)" and "fast neutron").
If this is considered to be a GBrowse bug, I can file a bug report; otherwise, if it's a documentation bug, the wiki should be updated.
Regards,
--
Nathan Weeks
IT Specialist
USDA-ARS Corn Insects and Crop Genetics Research Unit
This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.
Scott Cain
Dec 13, 2012, 12:44:46 PM12/13/12
to Weeks, Nathan, he...@gmod.org
I'd say it's a bug--you should be able specify multple tracks for one
invocation of the parameter; that's certainly the behavior I'd expect.
Please file a bug report.
Thanks!
Scott
--
------------------------------------------------------------------------
Scott Cain, Ph. D. scott at scottcain dot net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research
invocation of the parameter; that's certainly the behavior I'd expect.
Please file a bug report.
Thanks!
Scott
------------------------------------------------------------------------
Scott Cain, Ph. D. scott at scottcain dot net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research
Weeks, Nathan
Dec 13, 2012, 1:33:19 PM12/13/12
to Scott Cain, he...@gmod.org
Hi Scott,
I've submitted a bug report:
https://github.com/GMOD/GBrowse/issues/19
Best,
--
Nathan Weeks
IT Specialist
USDA-ARS Corn Insects and Crop Genetics Research Unit
________________________________________
From: Scott Cain [sc...@scottcain.net]
Sent: Thursday, December 13, 2012 11:44 AM
To: Weeks, Nathan
Cc: he...@gmod.org
Subject: Re: GBrowse enable/disable URL parameters
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