Load rpkm with cv_type

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Maximo Rivarola

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Jan 10, 2013, 3:55:28 PM1/10/13
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Hi,
thanks in advanced for the chado squema, works well!!!!
I have been stuck with one problem:

We have new info on rna-seq and would like to store the RPKM values in the "feature_expressionprop" table....
Yet, this requieres I use a cv_type related to the RPKM value i want to store.

What cv_type is related to the RPKM values that you obtain from rna-seq experiements???

My Q is basically is, how do you load RPKM values to genes stored in chado database???

RPKM:   Reads   per   kilobase   of   exon   model   per   million   mapped   reads


cheers and thanks!!!!
maximo

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Maximo Rivarola PhD.
Inv. Asistente CONICET. Grupo de Bioinformatica, Instituto de Biotecnologia
Centro de Investigaciones en Ciencias Veterinarias y Agronómicas (CICVyA)
INTA-Castelar
Calle Repetto y De Los Reseros s/n; (C.P. 1686) 
Hurlingham- Provincia de Buenos Aires
Tel: (0054-11) 4621-1278 interno: 173
http://www.linkedin.com/pub/maximo-rivarola/30/659/80b

riva...@gmail.com
mlriv...@cnia.inta.gov.ar

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