genorepr

[Mark]

Hi 

I have a genotype file that is 'sort-of' in sdat format, but the SNPs are coded 0,1,2, rather than e.g. AA, AC, CC. Can glu read this?

If so, could you give me an example of the syntax for, say, ginfo?

The file also contains some imputed SNPs, so the numbers are not always integer. Can GLU handle this?

An example of the data is below.

Thanks

Mark

ID       rs1 rs2 rs3 rs4

151865     1 2 0 0

151866 1 2 0 0

151867 1 1.006000042 1.013999939 0.052000001

151868 0 2 0 0

151869 1 1 1 0