ld.surrogates

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Mark

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Sep 27, 2012, 7:41:33 AM9/27/12
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Hi

I have a question about the ld.surrogates command. 
The documentation suggests that "Minimum r-squared threshold to output (default=0.95)", but after playing around a little, the default appears to be 0.15. 
Is this correct?

Mark

Kevin Jacobs <jacobs@bioinformed.com>

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Sep 27, 2012, 10:12:43 AM9/27/12
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Hi Mark,

You are correct -- the default minimum r2 is 0.15.  I apologize that the version you have lists the wrong default shown.  The default is shown correctly in more recent versions.

Best regards,
-Kevin
 


Mark

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