build error

[vincenzo moreschini]

Dear sirs,

I am trying to build the last version of glu, downloaded via
mercurial.
But I receive this error at the start:

C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -
Wall -Wstrict-prototypes -fPIC

compile options: '-I/work/adt/gmancini/pkg/python/lib/python2.6/site-
packages/numpy/core/include -I/work/adt/gmancini/pkg/python/include/
python2.6 -c'
gcc: glu/lib/seqlib/_edits.c
gcc: glu/lib/seqlib/_edits.c: No such file or directory
gcc: no input files
gcc: glu/lib/seqlib/_edits.c: No such file or directory
gcc: no input files
error: Command "gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -
O3 -Wall -Wstrict-prototypes -fPIC -I/work/adt/gmancini/pkg/python/lib/
python2.6/site-packages/numpy/core/include -I/work/adt/gmancini/pkg/
python/include/python2.6 -c glu/lib/seqlib/_edits.c -o build/
temp.linux-x86_64-2.6/glu/lib/seqlib/_edits.o" failed with exit status
1

indeed, the file _edits.c is absent

can you help me?

regards

vm

[vincenzo moreschini]

[Kevin Jacobs <jacobs@bioinformed.com>]

Hi Vincenzo,

This is a known glitch that I've just corrected.  Your alternatives are to edit out the lines that refer to _edits.c in setup.py or re-pull my latest source tree.

Thanks for the report,
-Kevin

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[vincenzo moreschini]

thank you for your fast reply; I will try to pull tha latest source
tree asap

regards

[vincenzo moreschini]

After a fresh download, distuutils did not give any error.
So everything seems to be ok and I suppose I can start to use glu

thank you again

vm and giordano mancini

[Jacobs, Kevin (NIH/NCI) [C]]

Congratulations! Please let me know if you run into any trouble and I'll be happy to help. The documentation is not very complete, but I'll do whatever I can to fill in the gaps.

-Kevin

________________________________________
From: vincenzo moreschini [giordano...@gmail.com]
Sent: Monday, February 14, 2011 05:32 PM
To: glu-users
Subject: [glu-users] Re: build error

thank you again

vm and giordano mancini

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