problem with SLEA

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Doo-Sik Kong

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Oct 25, 2013, 1:24:37 PM10/25/13
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When I perform SLEA on gitools2.0, I found some problems with column sorting function on heatmap. 
I added my annotation txt file on the column to show color clustering of column. 
But, label configuration was not shown. 
It must be very nice software tool but it has still some bugs on the program. 
How can I figure out this?

Thanks,

Doosik

Michael Schroeder

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Oct 28, 2013, 5:37:44 AM10/28/13
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Hi Doo-Sik Kong

I do not fully understand what steps you were trying to do. Could you answer the following questions? 

1) Did you add an annotation .txt before or after running SLEA? You should add the annotations to the heatmap after you have opened it.
2) When you added the annotation .txt.-file, did the information show up in the dialog?

Also, which version of Gitools are you using? I hope with your feedback I will be able to help you.


Just for completeness, here are the steps to add color annotation to rows or columns with Gitools 2.0:

- Right click on rows or column names and select add [row/col] header
- A dialog will show up, select Add colored labels from annotations
- The window "Annotations selections" lists the available annotations in and lets you add more via the "add annotations from file" button. Select the desired annotation and click next and finish.


Best,
Michael



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Doo-Sik Kong

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Nov 2, 2013, 12:36:39 PM11/2/13
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Hi Michael.

I found that I did foolish error in making annotation file. 
id name on annotation txt file did not match with cdm. file's those. 
Finally, I figured out my problem. So, I am happy

Great thanks. 

Doosik

Michael Schroeder

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Nov 4, 2013, 9:19:35 AM11/4/13
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Hi Doo-Sik Kong

I am glad you could solve the issue.

Best,
Michael
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