Hi Mary,
try to click one of the "gitools-?GB.bat" files that are in the "bin" folder.
For example if you want to let gitools use 1GB of RAM use
gitools-1GB.bat, if you want 2GB then gitools-2GB.bat, etc.
Best,
--
Jordi Deu-Pons, Software Engineer
Biomedical Genomics Group
Research Unit on Biomedical Informatics (GRIB)
Pompeu Fabra University @ PRBB
http://bg.upf.edu
http://www.intogen.org
http://www.gitools.org
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