>Since there is no other mapping for this folder in my TFS workspace, I
am assuming that the workspace is re-mapped for every bridging
operation?
Indeed!
>Is there a way to configure git-tfs to retain these mappings?
No, there isn't.
I would like to know what is your goal why you want to keep this mapping. Because the mapping contain only the files that have changed and not all the files and is not intended to work in/with it...
The folder is deleted because in the past, it could grow a lot and take a lot of place and because it is hidden to the user never deleted.