Website interface

[Hanqin Li]

I read the Nature method paper today. Giggle seems to be a very powerful and efficient search engine against the huge annotation database.  

As a biological researcher not familiar with Linux and coding environment, I wonder whether giggle has a website-based interface where people can upload CHIP-seq bed file and choose which annotation dataset they want to compare to. 

I think it would be much more helpful to the community where many scientist generate sequencing data but lack bioinformatics skills.

[Ryan Layer]

Try

http://ryanlayer.github.io/giggle/index.html?primary_index=ec2-54-227-176-15.compute-1.amazonaws.com/rme&ucsc_index=ec2-54-227-176-15.compute-1.amazonaws.com/ucsc

The input file must be a bgzipped bedfile

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Ryan Layer

[Sita...@163.com]

Ryan,

When I run my uploaded CHIP-seq bed file in  the website-based interface , it doesn't seem to give any progress or feedback ,should I adjust my settings ?

http://ryanlayer.github.io/giggle/index.html?primary_index=ec2-54-227-176-15.compute-1.amazonaws.com/rme&ucsc_index=ec2-54-227-176-15.compute-1.amazonaws.com/ucsc

thanks!

在 2018年1月26日星期五 UTC+8下午11:02:43，Hanqin Li写道：

[Ryan Layer]

Sorry about that. The server ran out of disk space. Please try again.

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Ryan Layer