GIAB Analysis Team

Contact owners and managers

1–30 of 258

Welcome to the email list of the Genome in a Bottle Consortium Analysis Team. This team is charged with establishing and distributing an authoritative set of benchmark calls for GIAB genomes (see goals). This email list is intended for informing about new datasets and analyses made available to GIAB, conference calls to coordinate analyses, and discussions among Analysis Team members.

0 selected

Zook, Justin M. (Fed)

Apr 22

GIAB call next Monday 4/29 and new Cancer GIAB call invite

Dear GIAB Analysis Team, We look forward to seeing many of you on our next regular GIAB analysis team

unread,

GIAB call next Monday 4/29 and new Cancer GIAB call invite

Dear GIAB Analysis Team, We look forward to seeing many of you on our next regular GIAB analysis team

Apr 22

Zook, Justin M. (Fed)2

Apr 1

GIAB Analysis Team (NEW ZOOM INVITE) call Monday, April 1, at 1pm EDT

Dear GIAB Analysis Team, A reminder that we'll be having a GIAB call today at 1pm EDT. Timour

unread,

GIAB Analysis Team (NEW ZOOM INVITE) call Monday, April 1, at 1pm EDT

Dear GIAB Analysis Team, A reminder that we'll be having a GIAB call today at 1pm EDT. Timour

Apr 1

Zook, Justin M. (Fed)

Mar 4

New Slack channel for Cancer GIAB analyses

Dear GIAB Analysis Team, As I mentioned on the call today, if you are interested in participating in

unread,

New Slack channel for Cancer GIAB analyses

Dear GIAB Analysis Team, As I mentioned on the call today, if you are interested in participating in

Mar 4

Zook, Justin M. (Fed)5

Mar 4

Next GIAB call on Jan 29

Dear GIAB Analysis Team We look forward to seeing many of you on our GIAB call today, Mar 4, at 1pm

unread,

Next GIAB call on Jan 29

Dear GIAB Analysis Team We look forward to seeing many of you on our GIAB call today, Mar 4, at 1pm

Mar 4

Feb 11

Canceled: GIAB RNA analysis

Hi all, We are canceling this month's call because there are not a lot of updates to report.

unread,

Canceled: GIAB RNA analysis

Hi all, We are canceling this month's call because there are not a lot of updates to report.

Feb 11

Zook, Justin M. (Fed), Schnabel, Robert D.2

12/11/23

GIAB call TODAY, Monday, Dec 11 about GIAB-Ag and Cancer GIAB

Hi all, Thanks for listening today. Attached (hopefully) is a pdf of the slides I presented. The URLs

unread,

GIAB call TODAY, Monday, Dec 11 about GIAB-Ag and Cancer GIAB

Hi all, Thanks for listening today. Attached (hopefully) is a pdf of the slides I presented. The URLs

12/11/23

Zook, Justin M. (Fed)6

12/5/23

New GIAB resources, preprints, and posters at ASHG

Dear Genome in a Bottle, We will be having our GIAB analysis team call on Monday, Dec 11, at 1pm EST,

unread,

New GIAB resources, preprints, and posters at ASHG

Dear Genome in a Bottle, We will be having our GIAB analysis team call on Monday, Dec 11, at 1pm EST,

12/5/23

Zook, Justin M. (Fed)

10/12/23

Next GIAB call Nov 13

Dear GIAB, We will not have our regular call next Monday, so instead we plan to send an email update

unread,

Next GIAB call Nov 13

Dear GIAB, We will not have our regular call next Monday, so instead we plan to send an email update

10/12/23

Zook, Justin M. (Fed)7

9/18/23

Next GIAB call on August 21

Hi all, I've attached the slides from Ade and Camille today. Let us know if you have any

unread,

Next GIAB call on August 21

Hi all, I've attached the slides from Ade and Camille today. Let us know if you have any

9/18/23

Zook, Justin M. (Fed)

7/27/23

Initial public data from GIAB tumor/normal pair

Dear GIAB, As we'd presented on GIAB calls, we have some initial data from karyotyping, Illumina,

unread,

Initial public data from GIAB tumor/normal pair

Dear GIAB, As we'd presented on GIAB calls, we have some initial data from karyotyping, Illumina,

7/27/23

Zook, Justin M. (Fed)

7/27/23

New draft GIAB HG002 tandem repeat benchmark

Dear GIAB, Adam English and Fritz Sedlazeck have been co-leading our GIAB team working on a benchmark

unread,

New draft GIAB HG002 tandem repeat benchmark

Dear GIAB, Adam English and Fritz Sedlazeck have been co-leading our GIAB team working on a benchmark

7/27/23

Zook, Justin M. (Fed)

6/20/23

Canceling June 26 GIAB call

Dear GIAB analysis team, Since I'll be on vacation next week, we won't have our regular GIAB

unread,

Canceling June 26 GIAB call

Dear GIAB analysis team, Since I'll be on vacation next week, we won't have our regular GIAB

6/20/23

Zook, Justin M. (Fed)12

6/5/23

GIAB updates and resuming monthly calls

Dear GIAB analysis team, A reminder that we have our GIAB call today at 1pm EDT. I'll give a

unread,

GIAB updates and resuming monthly calls

Dear GIAB analysis team, A reminder that we have our GIAB call today at 1pm EDT. I'll give a

6/5/23

Zook, Justin M. (Fed)

5/11/23

Hiring a Bioinformatician at NIST for GIAB

Dear GIAB, We're looking to hire a bioinformatician at NIST that will help us develop the next

unread,

Hiring a Bioinformatician at NIST for GIAB

Dear GIAB, We're looking to hire a bioinformatician at NIST that will help us develop the next

5/11/23

Zook, Justin M. (Fed)

4/17/23

Variant calling and benchmarking review

Dear GIAB, We thought many of you may be interested in a review “Variant calling and benchmarking in

unread,

Variant calling and benchmarking review

Dear GIAB, We thought many of you may be interested in a review “Variant calling and benchmarking in

4/17/23

2/13/23

Re: GIAB RNA analysis

Just a reminder that we are meeting via Zoom. Link: https://northeastern.zoom.us/j/95532823193?pwd=

unread,

Re: GIAB RNA analysis

Just a reminder that we are meeting via Zoom. Link: https://northeastern.zoom.us/j/95532823193?pwd=

2/13/23

2/2/23

GIAB RNA analysis

Hi everyone, This is the invite for the working group calls, starting February 13 at 3 PM EST. We

unread,

GIAB RNA analysis

Hi everyone, This is the invite for the working group calls, starting February 13 at 3 PM EST. We

2/2/23

Zook, Justin M. (Fed)

2/2/23

No GIAB call on 2/6

Dear GIAB, Because many will be traveling to AGBT next week, we will not hold our scheduled GIAB call

unread,

No GIAB call on 2/6

Dear GIAB, Because many will be traveling to AGBT next week, we will not hold our scheduled GIAB call

2/2/23

1/12/23

GIAB RNA analysis meeting plan - starting February 2023

Dear all, Happy new year! We are preparing the start of a focused working group around RNA data sets

unread,

GIAB RNA analysis meeting plan - starting February 2023

Dear all, Happy new year! We are preparing the start of a focused working group around RNA data sets

1/12/23

Zook, Justin M. (Fed)

10/1/21

Expanded small variant benchmark now available for all GIAB samples!

Dear Genome in a Bottle Consortium, We are excited to have completed and release the v4.2.1 small

unread,

Expanded small variant benchmark now available for all GIAB samples!

Dear Genome in a Bottle Consortium, We are excited to have completed and release the v4.2.1 small

10/1/21

Zook, Justin M. (Fed)8

8/23/21

Next GIAB call on Monday, March 22 about RNA-sequencing of GIAB samples

Here are the slides I'll be presenting today. Cheers, Justin From: 'Zook, Justin M. (Fed)

unread,

Next GIAB call on Monday, March 22 about RNA-sequencing of GIAB samples

Here are the slides I'll be presenting today. Cheers, Justin From: 'Zook, Justin M. (Fed)

8/23/21

Zook, Justin M. (Fed)

7/14/21

Update on GIAB-related and T2T manuscripts

Dear Genome in a Bottle Consortium, We are excited about several recent preprints from GIAB and from

unread,

Update on GIAB-related and T2T manuscripts

Dear Genome in a Bottle Consortium, We are excited about several recent preprints from GIAB and from

7/14/21

Zook, Justin M. (Fed)

7/8/21

Summer break from GIAB calls

Dear GIAB Analysis Team, We are taking a brief break this summer from GIAB calls this summer as many

unread,

Summer break from GIAB calls

Dear GIAB Analysis Team, We are taking a brief break this summer from GIAB calls this summer as many

7/8/21

Zook, Justin M. (Fed)

6/11/21

GIAB Machine Learning Variant Caller Call Summaries

Dear GIAB Analysis Team, Thanks very much to Andrew Carroll, Kishwar Shafin, Mohammad Sahraeian, and

unread,

GIAB Machine Learning Variant Caller Call Summaries

Dear GIAB Analysis Team, Thanks very much to Andrew Carroll, Kishwar Shafin, Mohammad Sahraeian, and

6/11/21

Zook, Justin M. (Fed)

6/8/21

New GIAB benchmark for challenging medically relevant genes

Dear Genome in a Bottle Community, We are excited to release a GIAB benchmark for 273 challenging

unread,

New GIAB benchmark for challenging medically relevant genes

Dear Genome in a Bottle Community, We are excited to release a GIAB benchmark for 273 challenging

6/8/21

Zook, Justin M. (Fed)

5/26/21

GIAB medically relevant gene benchmark manuscript nearing submission

Dear GIAB Analysis Team, We're excited to be finalizing our manuscript about a new benchmark for

unread,

GIAB medically relevant gene benchmark manuscript nearing submission

Dear GIAB Analysis Team, We're excited to be finalizing our manuscript about a new benchmark for

5/26/21

Zook, Justin M. (Fed)2

4/26/21

GIAB call TODAY, April 19 about EpiQC Project

Dear GIAB Analysis Team A reminder that the GIAB Machine Learning call is planned for 3pm EDT (12pm

unread,

GIAB call TODAY, April 19 about EpiQC Project

Dear GIAB Analysis Team A reminder that the GIAB Machine Learning call is planned for 3pm EDT (12pm

4/26/21

Olson, Nathanael David (Fed)

4/23/21

Email Subject: April 19th, 2021 GIAB Analysis Team - EpiQC Project

Dear GIAB Analysis Team, Jon Foox presented the results of their EpiQC study comparing DNA

unread,

Email Subject: April 19th, 2021 GIAB Analysis Team - EpiQC Project

Dear GIAB Analysis Team, Jon Foox presented the results of their EpiQC study comparing DNA

4/23/21

Olson, Nathanael David (Fed)

3/24/21

March 22nd, 2021 GIAB Analysis Team - RNA-sequencing of GIAB samples

Dear GIAB Analysis Team, Justin Zook presented context for the proposed RNA sequencing of GIAB

unread,

March 22nd, 2021 GIAB Analysis Team - RNA-sequencing of GIAB samples

Dear GIAB Analysis Team, Justin Zook presented context for the proposed RNA sequencing of GIAB

3/24/21

Zook, Justin M. (Fed)4

3/1/21

GIAB Analysis Team and Machine Learning Team call schedules

Dear GIAB Analysis Team, We will be having our GIAB Machine Learning team call at 3pm ET today.

unread,

GIAB Analysis Team and Machine Learning Team call schedules

Dear GIAB Analysis Team, We will be having our GIAB Machine Learning team call at 3pm ET today.

3/1/21

Search

Clear search

Close search

Google apps

Main menu