Installation Errors - Rocks Cluster 7, gcc 7.2.0, R 3.5.2
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Suraj Jadhav
Jul 29, 2019, 6:35:56 AM7/29/19
to ggplot2
Team,
I am trying install ggplots2 using - install.packages("tidyverse")
There are numerous errors I am getting hence wanted to know if this package has been installed in "Rocks Cluster 7, gcc 7.2.0, R 3.5.2" and if yes then how were these errors resolved?
Warning messages:
1: In install.packages("tidyverse") :
installation of package ‘colorspace’ had non-zero exit status
2: In install.packages("tidyverse") :
installation of package ‘processx’ had non-zero exit status
3: In install.packages("tidyverse") :
installation of package ‘utf8’ had non-zero exit status
4: In install.packages("tidyverse") :
installation of package ‘Rcpp’ had non-zero exit status
5: In install.packages("tidyverse") :
installation of package ‘vctrs’ had non-zero exit status
6: In install.packages("tidyverse") :
installation of package ‘curl’ had non-zero exit status
7: In install.packages("tidyverse") :
installation of package ‘openssl’ had non-zero exit status
8: In install.packages("tidyverse") :
installation of package ‘stringi’ had non-zero exit status
9: In install.packages("tidyverse") :
installation of package ‘jsonlite’ had non-zero exit status
10: In install.packages("tidyverse") :
installation of package ‘plyr’ had non-zero exit status
11: In install.packages("tidyverse") :
installation of package ‘munsell’ had non-zero exit status
12: In install.packages("tidyverse") :
installation of package ‘htmltools’ had non-zero exit status
13: In install.packages("tidyverse") :
installation of package ‘tidyselect’ had non-zero exit status
14: In install.packages("tidyverse") :
installation of package ‘callr’ had non-zero exit status
15: In install.packages("tidyverse") :
installation of package ‘fs’ had non-zero exit status
16: In install.packages("tidyverse") :
installation of package ‘pillar’ had non-zero exit status
17: In install.packages("tidyverse") :
installation of package ‘hms’ had non-zero exit status
18: In install.packages("tidyverse") :
installation of package ‘httr’ had non-zero exit status
19: In install.packages("tidyverse") :
installation of package ‘stringr’ had non-zero exit status
20: In install.packages("tidyverse") :
installation of package ‘xml2’ had non-zero exit status
21: In install.packages("tidyverse") :
installation of package ‘knitr’ had non-zero exit status
22: In install.packages("tidyverse") :
installation of package ‘reshape2’ had non-zero exit status
23: In install.packages("tidyverse") :
installation of package ‘scales’ had non-zero exit status
24: In install.packages("tidyverse") :
installation of package ‘progress’ had non-zero exit status
25: In install.packages("tidyverse") :
installation of package ‘selectr’ had non-zero exit status
26: In install.packages("tidyverse") :
installation of package ‘lubridate’ had non-zero exit status
27: In install.packages("tidyverse") :
installation of package ‘tibble’ had non-zero exit status
28: In install.packages("tidyverse") :
installation of package ‘cellranger’ had non-zero exit status
29: In install.packages("tidyverse") :
installation of package ‘rmarkdown’ had non-zero exit status
30: In install.packages("tidyverse") :
installation of package ‘dplyr’ had non-zero exit status
31: In install.packages("tidyverse") :
installation of package ‘forcats’ had non-zero exit status
32: In install.packages("tidyverse") :
installation of package ‘ggplot2’ had non-zero exit status
33: In install.packages("tidyverse") :
installation of package ‘readr’ had non-zero exit status
34: In install.packages("tidyverse") :
installation of package ‘rvest’ had non-zero exit status
35: In install.packages("tidyverse") :
installation of package ‘dbplyr’ had non-zero exit status
36: In install.packages("tidyverse") :
installation of package ‘haven’ had non-zero exit status
37: In install.packages("tidyverse") :
installation of package ‘readxl’ had non-zero exit status
38: In install.packages("tidyverse") :
installation of package ‘reprex’ had non-zero exit status
39: In install.packages("tidyverse") :
installation of package ‘tidyr’ had non-zero exit status
40: In install.packages("tidyverse") :
installation of package ‘broom’ had non-zero exit status
41: In install.packages("tidyverse") :
installation of package ‘modelr’ had non-zero exit status
42: In install.packages("tidyverse") :
installation of package ‘tidyverse’ had non-zero exit status
----
> install.packages("tidyverse")
--- Please select a CRAN mirror for use in this session ---
Secure CRAN mirrors
1: 0-Cloud [https] 2: Algeria [https]
3: Australia (Canberra) [https] 4: Australia (Melbourne 1) [https]
5: Australia (Melbourne 2) [https] 6: Australia (Perth) [https]
7: Austria [https] 8: Belgium (Ghent) [https]
9: Brazil (PR) [https] 10: Brazil (RJ) [https]
11: Brazil (SP 1) [https] 12: Brazil (SP 2) [https]
13: Bulgaria [https] 14: Chile [https]
15: China (Hong Kong) [https] 16: China (Guangzhou) [https]
17: China (Lanzhou) [https] 18: China (Shanghai) [https]
19: Colombia (Cali) [https] 20: Czech Republic [https]
21: Denmark [https] 22: Ecuador (Cuenca) [https]
23: Ecuador (Quito) [https] 24: Estonia [https]
25: France (Lyon 1) [https] 26: France (Lyon 2) [https]
27: France (Marseille) [https] 28: France (Montpellier) [https]
29: France (Paris 2) [https] 30: Germany (Erlangen) [https]
31: Germany (Göttingen) [https] 32: Germany (Münster) [https]
33: Germany (Regensburg) [https] 34: Greece [https]
35: Hungary [https] 36: Iceland [https]
37: Indonesia (Jakarta) [https] 38: Ireland [https]
39: Italy (Padua) [https] 40: Japan (Tokyo) [https]
41: Japan (Yonezawa) [https] 42: Korea (Busan) [https]
43: Korea (Gyeongsan-si) [https] 44: Korea (Seoul 1) [https]
45: Korea (Ulsan) [https] 46: Malaysia [https]
47: Mexico (Mexico City) [https] 48: Norway [https]
49: Philippines [https] 50: Serbia [https]
51: Spain (A Coruña) [https] 52: Spain (Madrid) [https]
53: Sweden [https] 54: Switzerland [https]
55: Turkey (Denizli) [https] 56: Turkey (Mersin) [https]
57: UK (Bristol) [https] 58: UK (London 1) [https]
59: USA (CA 1) [https] 60: USA (IA) [https]
61: USA (KS) [https] 62: USA (MI 1) [https]
63: USA (MI 2) [https] 64: USA (OR) [https]
65: USA (TN) [https] 66: USA (TX 1) [https]
67: Uruguay [https] 68: (other mirrors)
Selection: 55
also installing the dependencies ‘colorspace’, ‘plyr’, ‘munsell’, ‘processx’, ‘knitr’, ‘htmltools’, ‘utf8’, ‘reshape2’, ‘Rcpp’, ‘tidyselect’, ‘scales’, ‘vctrs’, ‘curl’, ‘openssl’, ‘cellranger’, ‘progress’, ‘callr’, ‘fs’, ‘rmarkdown’, ‘selectr’, ‘stringi’, ‘pillar’, ‘broom’, ‘dplyr’, ‘dbplyr’, ‘forcats’, ‘ggplot2’, ‘haven’, ‘hms’, ‘httr’, ‘jsonlite’, ‘lubridate’, ‘modelr’, ‘readr’, ‘readxl’, ‘reprex’, ‘rvest’, ‘stringr’, ‘tibble’, ‘tidyr’, ‘xml2’
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* installing *source* package ‘colorspace’ ...
** package ‘colorspace’ successfully unpacked and MD5 sums checked
** libs
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colorspace.c -o colorspace.o
colorspace.c: In function ‘gtrans’:
colorspace.c:61:5: internal compiler error: Illegal instruction
if (u > 0.00304)
^~
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://gcc.gnu.org/bugs/> for instructions.
make: *** [colorspace.o] Error 1
ERROR: compilation failed for package ‘colorspace’
* removing ‘/opt/R/lib64/R/library/colorspace’
* installing *source* package ‘processx’ ...
** package ‘processx’ successfully unpacked and MD5 sums checked
** libs
gcc -g -O2 -Wall tools/px.c -o tools/px
gcc -g -O2 supervisor/supervisor.c supervisor/utils.c \
-o supervisor/supervisor
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c client.c -o client.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c errors.c -o errors.o
gcc -shared -L"/opt/R/lib64/R/lib" -L/usr/local/lib64 -o client.so base64.o client.o errors.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c poll.c -o poll.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-connection.c -o processx-connection.o
processx-connection.c: In function ‘processx__connection_realloc’:
processx-connection.c:1275:3: internal compiler error: Illegal instruction
size_t new_size = (size_t) (ccon->utf8_allocated_size * 1.2);
^~~~~~
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://gcc.gnu.org/bugs/> for instructions.
make: *** [processx-connection.o] Error 1
ERROR: compilation failed for package ‘processx’
* removing ‘/opt/R/lib64/R/library/processx’
* installing *source* package ‘utf8’ ...
** package ‘utf8’ successfully unpacked and MD5 sums checked
** libs
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c as_utf8.c -o as_utf8.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c bytes.c -o bytes.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c context.c -o context.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c init.c -o init.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render.c -o render.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render_table.c -o render_table.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c string.c -o string.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c text.c -o text.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_encode.c -o utf8_encode.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_format.c -o utf8_format.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_normalize.c -o utf8_normalize.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_valid.c -o utf8_valid.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_width.c -o utf8_width.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c util.c -o util.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/array.c -o utf8lite/src/array.o
utf8lite/src/array.c: In function ‘utf8lite_bigarray_size_add’:
utf8lite/src/array.c:71:3: internal compiler error: Illegal instruction
n1 = UTF8LITE_ARRAY_GROW * size;
^~
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://gcc.gnu.org/bugs/> for instructions.
make: *** [utf8lite/src/array.o] Error 1
ERROR: compilation failed for package ‘utf8’
* removing ‘/opt/R/lib64/R/library/utf8’
* installing *source* package ‘Rcpp’ ...
** package ‘Rcpp’ successfully unpacked and MD5 sums checked
** libs
g++ -I"/opt/R/lib64/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c api.cpp -o api.o
In file included from /opt/gnu/gcc/include/c++/7.2.0/bits/uniform_int_dist.h:35:0,
from /opt/gnu/gcc/include/c++/7.2.0/bits/stl_algo.h:66,
from /opt/gnu/gcc/include/c++/7.2.0/algorithm:62,
from ../inst/include/RcppCommon.h:63,
from ../inst/include/Rcpp.h:27,
from api.cpp:24:
/opt/gnu/gcc/include/c++/7.2.0/limits:1599:7: internal compiler error: Illegal instruction
min() _GLIBCXX_USE_NOEXCEPT { return __FLT_MIN__; }
^~~
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://gcc.gnu.org/bugs/> for instructions.
make: *** [api.o] Error 1
ERROR: compilation failed for package ‘Rcpp’
* removing ‘/opt/R/lib64/R/library/Rcpp’
* installing *source* package ‘vctrs’ ...
** package ‘vctrs’ successfully unpacked and MD5 sums checked
** libs
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arg-counter.c -o arg-counter.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c arg.c -o arg.o
arg.c: In function ‘vctrs_arg’:
arg.c:37:5: internal compiler error: Illegal instruction
next_size *= 1.5;
^~~~~~~~~
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://gcc.gnu.org/bugs/> for instructions.
make: *** [arg.o] Error 1
ERROR: compilation failed for package ‘vctrs’
* removing ‘/opt/R/lib64/R/library/vctrs’
* installing *source* package ‘curl’ ...
** package ‘curl’ successfully unpacked and MD5 sums checked
Package libcurl was not found in the pkg-config search path.
Perhaps you should add the directory containing `libcurl.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libcurl' found
Package libcurl was not found in the pkg-config search path.
Perhaps you should add the directory containing `libcurl.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libcurl' found
Using PKG_CFLAGS=
Using PKG_LIBS=-lcurl
------------------------- ANTICONF ERROR ---------------------------
Configuration failed because libcurl was not found. Try installing:
* deb: libcurl4-openssl-dev (Debian, Ubuntu, etc)
* rpm: libcurl-devel (Fedora, CentOS, RHEL)
* csw: libcurl_dev (Solaris)
If libcurl is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a libcurl.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
--------------------------------------------------------------------
ERROR: configuration failed for package ‘curl’
* removing ‘/opt/R/lib64/R/library/curl’
* installing *source* package ‘openssl’ ...
** package ‘openssl’ successfully unpacked and MD5 sums checked
Using PKG_CFLAGS=
------------------------- ANTICONF ERROR ---------------------------
Configuration failed because openssl was not found. Try installing:
* deb: libssl-dev (Debian, Ubuntu, etc)
* rpm: openssl-devel (Fedora, CentOS, RHEL)
* csw: libssl_dev (Solaris)
* brew: openssl@1.1 (Mac OSX)
If openssl is already installed, check that 'pkg-config' is in your
PATH and PKG_CONFIG_PATH contains a openssl.pc file. If pkg-config
is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
--------------------------------------------------------------------
ERROR: configuration failed for package ‘openssl’
* removing ‘/opt/R/lib64/R/library/openssl’
* installing *source* package ‘stringi’ ...
** package ‘stringi’ successfully unpacked and MD5 sums checked
checking for R_HOME... /opt/R/lib64/R
checking for R... /opt/R/lib64/R/bin/R
checking for endianness... little
checking for R >= 3.1.0 for C++11 use... yes
checking for R < 3.4.0 for CXX1X flag use... no
checking for cat... /usr/bin/cat
checking for local ICUDT_DIR... icu61/data
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... g++ -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++11 accepts -g... yes
checking whether the C++ compiler supports the long long type... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler supports Standard Template Library... yes
checking whether std::map is available... yes
checking for pkg-config... /usr/bin/pkg-config
checking with pkg-config for the system ICU4C... no
*** pkg-config did not detect ICU4C-devel libraries installed
*** Trying with "standard" fallback flags
checking whether we may build an ICU4C-based project... no
*** The available ICU4C cannot be used
checking whether we may compile src/icu61/common/putil.cpp... no
checking whether we may compile src/icu61/common/putil.cpp with -D_XPG6... no
*** The ICU4C bundle could not be built. Upgrade your compiler flags.
*** trying with disabled C++11 compiler
checking for local ICUDT_DIR... icu55/data
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... g++ -E
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for elf.h... (cached) yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether the C++ compiler supports the long long type... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler supports Standard Template Library... yes
checking whether std::map is available... yes
checking for pkg-config... (cached) /usr/bin/pkg-config
checking with pkg-config for the system ICU4C... no
*** pkg-config did not detect ICU4C-devel libraries installed
*** Trying with "standard" fallback flags
checking whether we may build an ICU4C-based project... no
*** The available ICU4C cannot be used
checking whether we may compile src/icu55/common/umapfile.c... yes
checking whether we may compile src/icu55/common/putil.cpp... no
checking whether we may compile src/icu55/common/putil.cpp with -D_XPG6... no
*** The ICU4C bundle could not be built. Upgrade your compiler flags.
*** stringi cannot be built. Check your compiler flags (Makeconf, Makevars, etc.).
ERROR: configuration failed for package ‘stringi’
* removing ‘/opt/R/lib64/R/library/stringi’
* installing *source* package ‘jsonlite’ ...
** package ‘jsonlite’ successfully unpacked and MD5 sums checked
** libs
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c base64.c -o base64.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_array.c -o collapse_array.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_object.c -o collapse_object.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_pretty.c -o collapse_pretty.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape_chars.c -o escape_chars.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c integer64_to_na.c -o integer64_to_na.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_datelist.c -o is_datelist.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_recordlist.c -o is_recordlist.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_scalarlist.c -o is_scalarlist.o
gcc -I"/opt/R/lib64/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c modp_numtoa.c -o modp_numtoa.o
modp_numtoa.c: In function ‘modp_dtoa’:
modp_numtoa.c:134:2: internal compiler error: Illegal instruction
if (diff > 0.5) {
^~
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://gcc.gnu.org/bugs/> for instructions.
make: *** [modp_numtoa.o] Error 1
ERROR: compilation failed for package ‘jsonlite’
* removing ‘/opt/R/lib64/R/library/jsonlite’
ERROR: dependency ‘Rcpp’ is not available for package ‘plyr’
* removing ‘/opt/R/lib64/R/library/plyr’
ERROR: dependency ‘colorspace’ is not available for package ‘munsell’
* removing ‘/opt/R/lib64/R/library/munsell’
ERROR: dependency ‘Rcpp’ is not available for package ‘htmltools’
* removing ‘/opt/R/lib64/R/library/htmltools’
ERROR: dependency ‘Rcpp’ is not available for package ‘tidyselect’
* removing ‘/opt/R/lib64/R/library/tidyselect’
ERROR: dependency ‘processx’ is not available for package ‘callr’
* removing ‘/opt/R/lib64/R/library/callr’
ERROR: dependency ‘Rcpp’ is not available for package ‘fs’
* removing ‘/opt/R/lib64/R/library/fs’
ERROR: dependencies ‘utf8’, ‘vctrs’ are not available for package ‘pillar’
* removing ‘/opt/R/lib64/R/library/pillar’
ERROR: dependency ‘vctrs’ is not available for package ‘hms’
* removing ‘/opt/R/lib64/R/library/hms’
ERROR: dependencies ‘curl’, ‘jsonlite’, ‘openssl’ are not available for package ‘httr’
* removing ‘/opt/R/lib64/R/library/httr’
ERROR: dependency ‘stringi’ is not available for package ‘stringr’
* removing ‘/opt/R/lib64/R/library/stringr’
ERROR: dependency ‘Rcpp’ is not available for package ‘xml2’
* removing ‘/opt/R/lib64/R/library/xml2’
ERROR: dependency ‘stringr’ is not available for package ‘knitr’
* removing ‘/opt/R/lib64/R/library/knitr’
ERROR: dependencies ‘plyr’, ‘Rcpp’, ‘stringr’ are not available for package ‘reshape2’
* removing ‘/opt/R/lib64/R/library/reshape2’
ERROR: dependencies ‘munsell’, ‘Rcpp’ are not available for package ‘scales’
* removing ‘/opt/R/lib64/R/library/scales’
ERROR: dependency ‘hms’ is not available for package ‘progress’
* removing ‘/opt/R/lib64/R/library/progress’
ERROR: dependency ‘stringr’ is not available for package ‘selectr’
* removing ‘/opt/R/lib64/R/library/selectr’
ERROR: dependencies ‘stringr’, ‘Rcpp’ are not available for package ‘lubridate’
* removing ‘/opt/R/lib64/R/library/lubridate’
ERROR: dependency ‘pillar’ is not available for package ‘tibble’
* removing ‘/opt/R/lib64/R/library/tibble’
ERROR: dependency ‘tibble’ is not available for package ‘cellranger’
* removing ‘/opt/R/lib64/R/library/cellranger’
ERROR: dependencies ‘knitr’, ‘htmltools’, ‘jsonlite’, ‘stringr’ are not available for package ‘rmarkdown’
* removing ‘/opt/R/lib64/R/library/rmarkdown’
ERROR: dependencies ‘Rcpp’, ‘tibble’, ‘tidyselect’ are not available for package ‘dplyr’
* removing ‘/opt/R/lib64/R/library/dplyr’
ERROR: dependency ‘tibble’ is not available for package ‘forcats’
* removing ‘/opt/R/lib64/R/library/forcats’
ERROR: dependencies ‘reshape2’, ‘scales’, ‘tibble’ are not available for package ‘ggplot2’
* removing ‘/opt/R/lib64/R/library/ggplot2’
ERROR: dependencies ‘Rcpp’, ‘tibble’, ‘hms’ are not available for package ‘readr’
* removing ‘/opt/R/lib64/R/library/readr’
ERROR: dependencies ‘xml2’, ‘httr’, ‘selectr’ are not available for package ‘rvest’
* removing ‘/opt/R/lib64/R/library/rvest’
ERROR: dependencies ‘dplyr’, ‘tibble’, ‘tidyselect’ are not available for package ‘dbplyr’
* removing ‘/opt/R/lib64/R/library/dbplyr’
ERROR: dependencies ‘forcats’, ‘hms’, ‘Rcpp’, ‘readr’, ‘tibble’ are not available for package ‘haven’
* removing ‘/opt/R/lib64/R/library/haven’
ERROR: dependencies ‘cellranger’, ‘Rcpp’, ‘tibble’, ‘progress’ are not available for package ‘readxl’
* removing ‘/opt/R/lib64/R/library/readxl’
ERROR: dependencies ‘callr’, ‘fs’, ‘rmarkdown’ are not available for package ‘reprex’
* removing ‘/opt/R/lib64/R/library/reprex’
ERROR: dependencies ‘dplyr’, ‘Rcpp’, ‘stringi’, ‘tibble’, ‘tidyselect’ are not available for package ‘tidyr’
* removing ‘/opt/R/lib64/R/library/tidyr’
ERROR: dependencies ‘dplyr’, ‘reshape2’, ‘stringr’, ‘tibble’, ‘tidyr’ are not available for package ‘broom’
* removing ‘/opt/R/lib64/R/library/broom’
ERROR: dependencies ‘broom’, ‘dplyr’, ‘tibble’, ‘tidyr’ are not available for package ‘modelr’
* removing ‘/opt/R/lib64/R/library/modelr’
ERROR: dependencies ‘broom’, ‘dplyr’, ‘dbplyr’, ‘forcats’, ‘ggplot2’, ‘haven’, ‘hms’, ‘httr’, ‘jsonlite’, ‘lubridate’, ‘modelr’, ‘readr’, ‘readxl’, ‘reprex’, ‘rvest’, ‘stringr’, ‘tibble’, ‘tidyr’, ‘xml2’ are not available for package ‘tidyverse’
* removing ‘/opt/R/lib64/R/library/tidyverse’
The downloaded source packages are in
‘/tmp/Rtmp34uqiZ/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
There were 42 warnings (use warnings() to see them)
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