Reversing scales & using limits: feature conflicts?
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Bryan Hanson
Aug 17, 2010, 3:53:15 PM8/17/10
to ggplot2
Hi Gang of 1000:
I’m finding what I think is a strange interaction between arguments. I’d like to plot a portion of a larger x, y data set: limit the x range, limit the y range, and reverse the x axis. The following works to give the plot I want, without the reversed x axis:
p1 <- ggplot(ps, aes(x = V1, y = V2)) +
scale_x_continuous(breaks = c(2000, 1900, 1800, 1700),
labels = c("2 K", "1.9 K", "1.8 K", "1.7 K"), limits = c(1700, 2000)) +
scale_y_continuous(limits = c(99, 101)) +
geom_smooth(span = 0.2, se = FALSE)
print(p1)
Note: a hideously large dput at the end of this msg has the data.
If I do anything that seems like it should reverse the x axis, really weird things happen (no errors thrown). Here’s what I’ve tried and the results:
Color me puzzled. I hope I’m not doing something stupid here! I suppose I could subset the data before attempting the plot, but that’s no fun!
TIA, I’ll bet Dennis knows how to make this work! Bryan
*************
Bryan Hanson
Professor of Chemistry & Biochemistry
DePauw University, Greencastle IN USA
> sessionInfo()
R version 2.11.0 (2010-04-22)
x86_64-apple-darwin9.8.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] datasets tools grid graphics grDevices utils stats methods base
other attached packages:
[1] mgcv_1.6-1 sendmailR_1.0-0 faraway_1.0.4 GGally_0.2
[5] xtable_1.5-6 mvbutils_2.5.1 ggplot2_0.8.8 proto_0.3-8
[9] reshape_0.8.3 ChemoSpec_1.45 R.utils_1.4.0 R.oo_1.7.2
[13] R.methodsS3_1.2.0 rgl_0.91 lattice_0.18-5 mvoutlier_1.4
[17] plyr_1.0.3 RColorBrewer_1.0-2 chemometrics_0.8 som_0.3-5
[21] robustbase_0.5-0-1 rpart_3.1-46 pls_2.1-0 pcaPP_1.8-1
[25] mvtnorm_0.9-9 nnet_7.3-1 mclust_3.4.4 MASS_7.3-5
[29] lars_0.9-7 e1071_1.5-23 class_7.3-2
loaded via a namespace (and not attached):
[1] Matrix_0.999375-38 nlme_3.1-96
And here is “ps”:
structure(list(V1 = c(399.2123, 401.1409, 403.0695, 404.998,
406.9266, 408.8552, 410.7837, 412.7123, 414.6408, 416.5694, 418.498,
420.4265, 422.3551, 424.2837, 426.2122, 428.1408, 430.0693, 431.9979,
433.9265, 435.855, 437.7836, 439.7121, 441.6407, 443.5693, 445.4978,
447.4264, 449.3549, 451.2835, 453.2121, 455.1406, 457.0692, 458.9978,
460.9263, 462.8549, 464.7834, 466.712, 468.6406, 470.5691, 472.4977,
474.4263, 476.3548, 478.2834, 480.2119, 482.1405, 484.0691, 485.9976,
487.9262, 489.8548, 491.7833, 493.7119, 495.6404, 497.569, 499.4976,
501.4261, 503.3547, 505.2832, 507.2118, 509.1404, 511.0689, 512.9975,
514.9261, 516.8546, 518.7832, 520.7117, 522.6403, 524.5688, 526.4974,
528.426, 530.3546, 532.2831, 534.2117, 536.1403, 538.0688, 539.9974,
541.9259, 543.8545, 545.783, 547.7116, 549.6402, 551.5687, 553.4973,
555.4258, 557.3544, 559.283, 561.2115, 563.1401, 565.0687, 566.9973,
568.9258, 570.8544, 572.7829, 574.7115, 576.64, 578.5686, 580.4972,
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636.4255, 638.354, 640.2826, 642.2111, 644.1397, 646.0682, 647.9968,
649.9254, 651.8539, 653.7825, 655.7111, 657.6396, 659.5682, 661.4968,
663.4254, 665.3539, 667.2825, 669.211, 671.1396, 673.0681, 674.9967,
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690.4252, 692.3538, 694.2823, 696.2109, 698.1395, 700.068, 701.9966,
703.9251, 705.8537, 707.7822, 709.7108, 711.6393, 713.5679, 715.4965,
717.425, 719.3536, 721.2822, 723.2108, 725.1393, 727.0679, 728.9965,
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101.0709, 101.133, 101.3321, 101.3047, 101.4192, 101.4902, 101.2338,
101.2171, 101.0889, 101.1599, 101.348, 101.2784, 101.1549, 101.2094,
101.0735, 101.0683, 101.2562, 101.2747, 101.1051, 101.1167, 101.2999,
101.2429, 101.3641, 101.4421, 101.2178, 101.0724, 101.0441, 101.0799,
101.1706, 101.2719, 101.3004, 101.2612, 101.1563, 101.0765, 101.0376,
101.0907, 101.1814, 101.2425, 101.1366, 101.0645, 101.0961, 101.1271,
101.1953, 101.1814, 101.1284, 101.134, 101.146, 101.1276, 101.1066,
101.0739, 101.0678, 101.0438, 101.0599, 101.107, 101.122, 101.0944,
101.0585, 101.0703, 101.0907, 101.1086, 101.141, 101.1332, 101.0925,
101.1005, 101.1318, 101.1054, 101.0627, 101.062, 101.1081, 101.093,
101.0077, 101.0068, 101.0525, 0)), .Names = c("V1", "V2"), class = "data.frame", row.names = c(NA,
-1869L))
I’m finding what I think is a strange interaction between arguments. I’d like to plot a portion of a larger x, y data set: limit the x range, limit the y range, and reverse the x axis. The following works to give the plot I want, without the reversed x axis:
p1 <- ggplot(ps, aes(x = V1, y = V2)) +
scale_x_continuous(breaks = c(2000, 1900, 1800, 1700),
labels = c("2 K", "1.9 K", "1.8 K", "1.7 K"), limits = c(1700, 2000)) +
scale_y_continuous(limits = c(99, 101)) +
geom_smooth(span = 0.2, se = FALSE)
print(p1)
Note: a hideously large dput at the end of this msg has the data.
If I do anything that seems like it should reverse the x axis, really weird things happen (no errors thrown). Here’s what I’ve tried and the results:
- add trans = “reverse” to the scale_x_continuous items: x-axis is limited properly, but not reversed, no data shown.
- change the limits in scaled_x_continuous to c(2000, 1700) (with or w/o changing the order of the breaks): x-axis is plotted reversed and limited, but data is gone.
- adding + scale_x_reverse(): x-axis is plotted reversed, the data is mostly plotted, but the x-axis is labeled with the full range of data values, not the breaks (try it to see what I mean)
- I began to think the problem was the smoothing, but if you replace the geom_smooth with geom_line() you get the same behavior AFAICT
- Then I thought the problem, at least when the data disappeared, was the y limits were just keeping it from appearing. Not so.
Color me puzzled. I hope I’m not doing something stupid here! I suppose I could subset the data before attempting the plot, but that’s no fun!
TIA, I’ll bet Dennis knows how to make this work! Bryan
*************
Bryan Hanson
Professor of Chemistry & Biochemistry
DePauw University, Greencastle IN USA
> sessionInfo()
R version 2.11.0 (2010-04-22)
x86_64-apple-darwin9.8.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] datasets tools grid graphics grDevices utils stats methods base
other attached packages:
[1] mgcv_1.6-1 sendmailR_1.0-0 faraway_1.0.4 GGally_0.2
[5] xtable_1.5-6 mvbutils_2.5.1 ggplot2_0.8.8 proto_0.3-8
[9] reshape_0.8.3 ChemoSpec_1.45 R.utils_1.4.0 R.oo_1.7.2
[13] R.methodsS3_1.2.0 rgl_0.91 lattice_0.18-5 mvoutlier_1.4
[17] plyr_1.0.3 RColorBrewer_1.0-2 chemometrics_0.8 som_0.3-5
[21] robustbase_0.5-0-1 rpart_3.1-46 pls_2.1-0 pcaPP_1.8-1
[25] mvtnorm_0.9-9 nnet_7.3-1 mclust_3.4.4 MASS_7.3-5
[29] lars_0.9-7 e1071_1.5-23 class_7.3-2
loaded via a namespace (and not attached):
[1] Matrix_0.999375-38 nlme_3.1-96
And here is “ps”:
structure(list(V1 = c(399.2123, 401.1409, 403.0695, 404.998,
406.9266, 408.8552, 410.7837, 412.7123, 414.6408, 416.5694, 418.498,
420.4265, 422.3551, 424.2837, 426.2122, 428.1408, 430.0693, 431.9979,
433.9265, 435.855, 437.7836, 439.7121, 441.6407, 443.5693, 445.4978,
447.4264, 449.3549, 451.2835, 453.2121, 455.1406, 457.0692, 458.9978,
460.9263, 462.8549, 464.7834, 466.712, 468.6406, 470.5691, 472.4977,
474.4263, 476.3548, 478.2834, 480.2119, 482.1405, 484.0691, 485.9976,
487.9262, 489.8548, 491.7833, 493.7119, 495.6404, 497.569, 499.4976,
501.4261, 503.3547, 505.2832, 507.2118, 509.1404, 511.0689, 512.9975,
514.9261, 516.8546, 518.7832, 520.7117, 522.6403, 524.5688, 526.4974,
528.426, 530.3546, 532.2831, 534.2117, 536.1403, 538.0688, 539.9974,
541.9259, 543.8545, 545.783, 547.7116, 549.6402, 551.5687, 553.4973,
555.4258, 557.3544, 559.283, 561.2115, 563.1401, 565.0687, 566.9973,
568.9258, 570.8544, 572.7829, 574.7115, 576.64, 578.5686, 580.4972,
582.4257, 584.3543, 586.2828, 588.2114, 590.14, 592.0685, 593.9971,
595.9257, 597.8542, 599.7828, 601.7114, 603.6399, 605.5685, 607.497,
609.4256, 611.3541, 613.2827, 615.2113, 617.1398, 619.0684, 620.9969,
622.9255, 624.8541, 626.7827, 628.7112, 630.6398, 632.5684, 634.4969,
636.4255, 638.354, 640.2826, 642.2111, 644.1397, 646.0682, 647.9968,
649.9254, 651.8539, 653.7825, 655.7111, 657.6396, 659.5682, 661.4968,
663.4254, 665.3539, 667.2825, 669.211, 671.1396, 673.0681, 674.9967,
676.9252, 678.8538, 680.7824, 682.7109, 684.6395, 686.5681, 688.4966,
690.4252, 692.3538, 694.2823, 696.2109, 698.1395, 700.068, 701.9966,
703.9251, 705.8537, 707.7822, 709.7108, 711.6393, 713.5679, 715.4965,
717.425, 719.3536, 721.2822, 723.2108, 725.1393, 727.0679, 728.9965,
730.925, 732.8536, 734.7821, 736.7107, 738.6392, 740.5678, 742.4963,
744.4249, 746.3535, 748.282, 750.2106, 752.1392, 754.0677, 755.9963,
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798.4247, 800.3532, 802.2818, 804.2103, 806.1389, 808.0674, 809.996,
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1000.924, 1002.852, 1004.781, 1006.709, 1008.638, 1010.566, 1012.495,
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1095.423, 1097.352, 1099.28, 1101.209, 1103.137, 1105.066, 1106.995,
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1257.422, 1259.351, 1261.28, 1263.208, 1265.137, 1267.065, 1268.994,
1270.922, 1272.851, 1274.779, 1276.708, 1278.637, 1280.565, 1282.494,
1284.422, 1286.351, 1288.279, 1290.208, 1292.136, 1294.065, 1295.994,
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1311.422, 1313.351, 1315.279, 1317.208, 1319.136, 1321.065, 1322.994,
1324.922, 1326.851, 1328.779, 1330.708, 1332.636, 1334.565, 1336.493,
1338.422, 1340.351, 1342.279, 1344.208, 1346.136, 1348.065, 1349.993,
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1878.419, 1880.348, 1882.276, 1884.205, 1886.134, 1888.062, 1889.991,
1891.919, 1893.848, 1895.776, 1897.705, 1899.634, 1901.562, 1903.491,
1905.419, 1907.348, 1909.276, 1911.205, 1913.133, 1915.062, 1916.991,
1918.919, 1920.848, 1922.776, 1924.705, 1926.633, 1928.562, 1930.49,
1932.419, 1934.348, 1936.276, 1938.205, 1940.133, 1942.062, 1943.99,
1945.919, 1947.848, 1949.776, 1951.705, 1953.633, 1955.562, 1957.49,
1959.419, 1961.348, 1963.276, 1965.205, 1967.133, 1969.062, 1970.99,
1972.919, 1974.847, 1976.776, 1978.705, 1980.633, 1982.562, 1984.49,
1986.419, 1988.347, 1990.276, 1992.204, 1994.133, 1996.062, 1997.99,
1999.919, 2001.847, 2003.776, 2005.704, 2007.633, 2009.562, 2011.49,
2013.419, 2015.347, 2017.276, 2019.204, 2021.133, 2023.062, 2024.99,
2026.919, 2028.847, 2030.776, 2032.704, 2034.633, 2036.561, 2038.49,
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2904.414, 2906.343, 2908.271, 2910.2, 2912.128, 2914.057, 2915.986,
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3403.912, 3405.84, 3407.769, 3409.698, 3411.626, 3413.555, 3415.483,
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3984.409, 3986.337, 3988.266, 3990.195, 3992.123, 3994.052, 3995.98,
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100.312, 99.71607, 99.15787, 98.90366, 98.94545, 98.99001, 98.80016,
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101.1559, 101.2999, 101.3907, 101.1794, 101.028, 101.0308, 101.0835,
101.0995, 101.1106, 101.1308, 101.1104, 101.1731, 101.3787, 101.3344,
101.1246, 101.0583, 101.1278, 101.1586, 101.1474, 101.2251, 101.1617,
101.0639, 101.181, 101.3774, 101.2186, 101.0779, 101.1245, 101.1336,
101.2867, 101.3795, 101.2987, 101.2017, 101.1845, 101.3839, 101.5621,
101.179, 101.0416, 101.0344, 101.0403, 100.9194, 100.925, 101.1054,
101.163, 101.3061, 101.5059, 101.4376, 101.0924, 100.922, 101.0988,
101.0974, 101.0097, 101.1471, 101.3097, 101.1918, 101.2137, 101.4536,
101.1286, 100.9019, 101.3139, 101.2816, 101.2691, 101.1665, 101.1571,
101.0532, 101.1479, 101.5831, 101.5513, 101.1686, 100.8712, 100.8118,
100.9148, 101.2323, 101.3842, 101.2432, 101.1168, 101.1054, 101.2609,
101.4753, 101.356, 101.1231, 101.0475, 101.0341, 101.2369, 101.4964,
101.5482, 101.2332, 100.9228, 101.0604, 101.243, 101.4427, 101.4908,
101.344, 101.0975, 101.1056, 101.5638, 101.3778, 101.4872, 101.5631,
101.4142, 101.049, 101.0449, 101.2933, 101.3414, 101.1484, 101.1752,
101.1624, 101.1311, 101.1972, 101.1777, 101.1826, 101.0654, 101.0767,
101.2348, 101.1366, 101.1491, 101.1063, 101.0879, 101.1076, 101.022,
101.1122, 101.3364, 101.2774, 101.0747, 101.2141, 101.1988, 101.0227,
101.1844, 101.2874, 101.2278, 101.0669, 101.1945, 101.3751, 101.1348,
101.2655, 101.3127, 101.0665, 101.0609, 101.0574, 101.2178, 101.4043,
101.3313, 101.2117, 101.225, 101.3391, 101.3778, 101.4004, 101.2591,
101.0608, 101.0345, 101.1842, 101.7466, 101.6525, 101.3429, 101.1478,
101.0709, 101.133, 101.3321, 101.3047, 101.4192, 101.4902, 101.2338,
101.2171, 101.0889, 101.1599, 101.348, 101.2784, 101.1549, 101.2094,
101.0735, 101.0683, 101.2562, 101.2747, 101.1051, 101.1167, 101.2999,
101.2429, 101.3641, 101.4421, 101.2178, 101.0724, 101.0441, 101.0799,
101.1706, 101.2719, 101.3004, 101.2612, 101.1563, 101.0765, 101.0376,
101.0907, 101.1814, 101.2425, 101.1366, 101.0645, 101.0961, 101.1271,
101.1953, 101.1814, 101.1284, 101.134, 101.146, 101.1276, 101.1066,
101.0739, 101.0678, 101.0438, 101.0599, 101.107, 101.122, 101.0944,
101.0585, 101.0703, 101.0907, 101.1086, 101.141, 101.1332, 101.0925,
101.1005, 101.1318, 101.1054, 101.0627, 101.062, 101.1081, 101.093,
101.0077, 101.0068, 101.0525, 0)), .Names = c("V1", "V2"), class = "data.frame", row.names = c(NA,
-1869L))
Dennis Murphy
Aug 17, 2010, 6:01:42 PM8/17/10
to Bryan Hanson, ggplot2
Hi Bryan:
Gee, no pressure :)
How about this?
p1 <- ggplot(ps, aes(x = -V1, y = V2))
p1 + geom_smooth(span = 0.2, se = FALSE) +
scale_y_continuous(limits = c(99, 101)) +
scale_x_continuous(breaks = c(-2000, -1900, -1800, -1700),
labels = c("2.0 K", "1.9 K", "1.8 K", "1.7 K"),
limits = c(-2000, -1700))
Nothing like faking out a problem with some choice labeling :)
HTH,
Dennis
Gee, no pressure :)
How about this?
p1 <- ggplot(ps, aes(x = -V1, y = V2))
p1 + geom_smooth(span = 0.2, se = FALSE) +
scale_y_continuous(limits = c(99, 101)) +
labels = c("2.0 K", "1.9 K", "1.8 K", "1.7 K"),
limits = c(-2000, -1700))
Nothing like faking out a problem with some choice labeling :)
HTH,
Dennis
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Bryan Hanson
Aug 17, 2010, 6:18:12 PM8/17/10
to Dennis Murphy, ggplot2
See, you knew what to do!
I’m really glad to have it working the way I need, but how on earth did you come up with this approach? And does anyone know why it works? You literally “can’t make this stuff up!”
Bryan
I’m really glad to have it working the way I need, but how on earth did you come up with this approach? And does anyone know why it works? You literally “can’t make this stuff up!”
Bryan
Hadley Wickham
Aug 17, 2010, 10:28:58 PM8/17/10
to Bryan Hanson, Dennis Murphy, ggplot2
That's exactly how scale_reverse works internally.
Hadley
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Bryan Hanson
Aug 18, 2010, 9:30:52 AM8/18/10
to Hadley Wickham, ggplot2
Well, I'm definitely learning different ways to conceptualize some of these
tasks, which is very helpful.
tasks, which is very helpful.
But if Dennis' strategy is how scale_reverse works internally, is it clear
why using scale_x_reverse() or scale_x_continuous(trans = "reverse") doesn't
work, as I mentioned in my OP? These were the approaches I dug out of the
web page and help archives. I must have something else in there that is
breaking it, possibly even as simple as a misplaced paren?
Thanks as always everyone! Bryan
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