sub_directory problem

[mcb...@gmail.com]

Any ideas

I had to download itk and boost tars as they were not downloading uscing cmake but now get this error:

CMake Error at cpp/src/third-party/CGAL-4.2/src/CMakeLists.txt:81 (add_subdirectory):

  add_subdirectory given source

  "/home/petic/PreClin/gerardus/gerardus/cpp/src/third-party/CGAL-4.2/src/CGAL_ImageIO/CMakeLists.txt"

  which is not an existing directory.

[mcb...@gmail.com]

is this a typo should it be libpthread? as I have that library? is this a bug

[Ramón Casero Cañas]

1) Why do you have a gerardus/gerardus directory? Try deleting everything in the build directory, and starting a clean cmake and build.

2) What's a typo? I can't see anything in your email that is similar to libpthread.

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Dr Ramón Casero, Post-Doctoral Researcher

 
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[mcb...@gmail.com]

Hi

1] I don't think the file directory should cause a problem should it, it's just i made a gerardus dierctory for the gerardus installation then git pulled into it which also creates a gerardus.

2]  the error occurs and when i look in CMake error log it says link problem /usr/bin -ld lpthreads cannot find

I can build again tomorrow but this is already a clean build following my previous errors.  I've found references online and created a minimal working example when I include libthread.h I need to link when running with g++, but need to link with -L lpthread and it runs, linking with -L lpthreads doesn't hence the query of a typo error somewhere

On Thursday, 26 October 2017 19:03:04 UTC+1, rcasero wrote:

1) Why do you have a gerardus/gerardus directory? Try deleting everything in the build directory, and starting a clean cmake and build.

2) What's a typo? I can't see anything in your email that is similar to libpthread.

On 26 October 2017 at 17:27, <mcb...@gmail.com> wrote:

is this a typo should it be libpthread? as I have that library? is this a bug

On Thursday, 26 October 2017 16:51:16 UTC+1, mcb...@gmail.com wrote:

Any ideas

I had to download itk and boost tars as they were not downloading uscing cmake but now get this error:

CMake Error at cpp/src/third-party/CGAL-4.2/src/CMakeLists.txt:81 (add_subdirectory):

  add_subdirectory given source

  "/home/petic/PreClin/gerardus/gerardus/cpp/src/third-party/CGAL-4.2/src/CGAL_ImageIO/CMakeLists.txt"

  which is not an existing directory.

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[Ramón Casero Cañas]

I have pushed some fixes to master, with the new sourceforge URLs for ITK and Boost, and also forcing the correct version of g++/gcc.

I've started the build with Matlab2016b and gcc/g++ 4.9, and the build starts and I don't get the libpthread problem (my build finds it).

Try pulling the new version, and building from scratch.

Best regards,

Ramon.

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[Ramón Casero Cañas]

PS. Also, for new stuff, would you mind opening a new issue in 

https://github.com/vigente/gerardus/issues

I'm going to close down the mailing list, the issues list will be more practical.

Best regards,

Ramon.

[mcb...@gmail.com]

sure I still get the same issue however even with the knew build, do you want me to log the problem elsewhere?

[Ramón Casero Cañas]

Yes, please, open an issue here

https://github.com/vigente/gerardus/issues

Can you also copy and paste the cmake output, from the beginning to where you get the error?

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