Extracting p-values from advanced.procD.lm() as data frame

broc....@mines.sdsmt.edu

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Jun 27, 2017, 5:41:26 PM6/27/17

to geomorph R package

Hello all,

I use the function advanced.procD.lm() to generate pairwise comparisons among various groups I am analyzing and would like to apply corrections to the resulting p-values (Bonferroni, Holm's, etc.). Because p-values are only part of the function's output, is there a way to extract these values as a data frame so I can carry out these corrections right in R? Or perhaps there's a slicker way to adjust them within geomorph?

Many thanks in advance!

Mike Collyer

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Jun 27, 2017, 6:17:55 PM6/27/17

to broc....@mines.sdsmt.edu, geomorph R package

As long as you save the analysis as an object; i.e.,

myFit <- advanced.procD.lm(f1, …)

then the P.values are extractable objects; e.g.,

myFit$P.means.dist

Cheers!

Mike

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broc....@mines.sdsmt.edu

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Jun 27, 2017, 7:49:54 PM6/27/17

to geomorph R package, broc....@mines.sdsmt.edu

Many thanks Mike!

On Tuesday, June 27, 2017 at 4:17:55 PM UTC-6, Michael Collyer wrote:

As long as you save the analysis as an object; i.e.,

myFit <- advanced.procD.lm(f1, …)

then the P.values are extractable objects; e.g.,

myFit$P.means.dist

Cheers!
Mike

On Jun 27, 2017, at 2:41 PM, broc....@mines.sdsmt.edu wrote:

Hello all,

I use the function advanced.procD.lm() to generate pairwise comparisons among various groups I am analyzing and would like to apply corrections to the resulting p-values (Bonferroni, Holm's, etc.). Because p-values are only part of the function's output, is there a way to extract these values as a data frame so I can carry out these corrections right in R? Or perhaps there's a slicker way to adjust them within geomorph?

Many thanks in advance!

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