Release of GenPipes 6.1.1

[Mareike Janiak]

A new release of GenPipes, 6.1.1 is now available.
 
What's new?
==========

This is a minor release:

• General
• when using the project tracking option, md5 checksums are now created in the json for all output files

• LongRead DNASeq

  • the platform parameter used for clairS can now be set via the config file
  • fixed non-unique nanoplot metrics output file names

• RNASeq

  • the table containing differential expression results now includes column names that indicate the source of the metric (edgeR or DESeq2)

• DNASeq

  • resolved an error that occurred in the verifybamID step when using WES data by adding the proper exome bed file
  • fixed path to custom djerba formatting files
  • resolved unwanted restarts of PCGR step

Where to find it?

============ 

* The source code for this version is in bitbucket : 

https://github.com/c3g/GenPipes/releases/download/6.1.1/c3g_genpipes-6.1.1.tar.gz

* GenPipes is distributed as a package via pypi:

https://pypi.org/project/c3g-genpipes/

* The module genpipes/6.1.1 is installed on Abacus (MGC), Rorqual, Nibi, Fir and Narval Alliance clusters.

 

* The source code is on GitHub :

https://github.com/c3g/GenPipes 

 

* For more documentation, please refer to :

https://genpipes.readthedocs.io/

Where is the detailed ChangeLog? 

========================== 

A ChangeLog (CHANGELOG.md) is available in the archive as well as in the repository.

 

Since we use git, there are many ways to get the details in many formats. 

The CHANGELOG.md is an overview of notable changes generated by auto-changelog:

https://github.com/CookPete/auto-changelog

--

Mareike Janiak

Bioinformatics Specialist - Technical Development

Canadian Centre for Computational Genomics (C3G)