skewer

[Kathleen Klein]

Good morning,

I see that you have switched to skewer in your DNA seq pipeline.

Can you help me interpret the output from skewer?

 

The following is from the log

457484502 read pairs processed; of these:

    41103 ( 0.01%) short read pairs filtered out after trimming by size control

   369071 ( 0.08%) empty read pairs filtered out after trimming by size control

457074328 (99.91%) read pairs available; of these:

58548556 (12.81%) trimmed read pairs available after processing

398525772 (87.19%) untrimmed read pairs available after processing

Thank you,

kathleen