creating a custom reference.ini

[Neha Joshi]

Hi, 

I am running genpipes dnaseq.py script for a genotyping data. I have a custom reference file (genome.fa) and I wish to create an .ini file to run the script with that reference. How can I do that? 

I appreciate your help!

Thanks, 

Neha

[Pubudu Nawarathna]

Hi,

What is the genome you want to use? First we have to check whether the genome is already stored in our database. Then you can use it easily. Otherwise, you may need to replace all the paths in the base.ini file using a custom.ini file.

Please do not hesitate to ask any question in the process.

Best.

Pubudu