Release of GenPipes 4.4.2
Mareike Janiak
A new release of the GenPipes, 4.4.2 is now available.
What's new?
==========
This is a bug-fix minor release :
* RNASeq :
- added multiqc
* MethylSeq :
- added multiqc
- fixed small issue with 'sambamba_merge_sam_files' step by making options section in config file not required
* ChipSeq :
- added option to filter bams for regions in blacklist prior to peak calling
* Tumor Pair :
- improved multiqc
* DNASeq :
- fixed 'manta_sv_calls' command by removing sed call that removed 'chr' from bed file
Where to find it?
============
* The source code for this version is in bitbucket :
https://bitbucket.org/mugqic/genpipes/downloads/genpipes-4.4.2.tar.gz
* The module mugqic/genpipes/4.4.2 is installed on Abacus (MGC), Béluga, Graham, Cedar and Narval Compute Canada clusters.
* The source code is in bitbucket :
https://bitbucket.org/mugqic/genpipes
* For more documentation, please refer to :
https://genpipes.readthedocs.io/
Where is the detailed ChangeLog?
==========================
A ChangeLog (CHANGELOG.md) is available in the archive as well as in the repository.
Since we use git, there are many ways to get the details in many formats.
One of our preferred ways is to use a script written by the author of the Ray assembler: Sébastien Boisvert,
which lists the commits by tag and author:
https://raw.github.com/sebhtml/ray/master/scripts/dump-ChangeLog.sh