Release of GenPipes 4.4.4
Mareike Janiak
A new release of the GenPipes, 4.4.4 is now available.
What's new?
==========
This is a bug-fix minor release :
* Tumor Pair :
- fixed a bug in the interval_list creation step when using an exome bed file for the ensemble protocol
- improved dependencies
* RNASeqLight :
- updated version of kallisto to 0.50.0
- renamed kallisto indexes to be more informative with regards to version used
/!\ the indexes renaming on kallisto may prevent older versions of the GenPipes config file to not locate the proper index file. Care should be taken to update custom ini files, especially if using older versions of GenPipes with something other than default versions of kallisto.
Where to find it?
============
* The source code for this version is in bitbucket :
https://bitbucket.org/mugqic/genpipes/downloads/genpipes-4.4.4.tar.gz
* The module mugqic/genpipes/4.4.4 is installed on Abacus (MGC), Béluga, Graham, Cedar and Narval Compute Canada clusters.
* The source code is in bitbucket :
https://bitbucket.org/mugqic/genpipes
* For more documentation, please refer to :
https://genpipes.readthedocs.io/
Where is the detailed ChangeLog?
==========================
A ChangeLog (CHANGELOG.md) is available in the archive as well as in the repository.
Since we use git, there are many ways to get the details in many formats.
One of our preferred ways is to use a script written by the author of the Ray assembler: Sébastien Boisvert,
which lists the commits by tag and author:
https://raw.github.com/sebhtml/ray/master/scripts/dump-ChangeLog.sh