Release of GenPipes 4.5.0

[Mareike Janiak]

A new release of GenPipes, 4.5.0 is now available.

 

What's new? 

==========

This is a medium release :

* Throughout:

    - fixed a bug in the clean command that caused the removal of the output directory. To avoid this potentially costly problem, we encourage everyone to use the new version!

       - the automatically generated job_list file is now named with both the pipeline and protocol name, making it easier to identify the appropriate job_list file when running multiple protocols   

* TumorPair :

      - added CollectWgsMetrics

      - improved display of QualiMap output in MultiQC report 

* RNASeq :

   - added md5sum for deliverables  

   - updated gtex version

* ChipSeq :

   - fixed a typo in an error message

Where to find it?

============ 

* The source code for this version is in bitbucket : 

https://bitbucket.org/mugqic/genpipes/downloads/genpipes-4.5.0.tar.gz

 

* The module mugqic/genpipes/4.5.0 is installed on Abacus (MGC), Béluga, Graham, Cedar and Narval Compute Canada clusters.

 

* The source code is in bitbucket :

https://bitbucket.org/mugqic/genpipes

 

* For more documentation, please refer to :

https://genpipes.readthedocs.io/

Where is the detailed ChangeLog? 

========================== 

A ChangeLog (CHANGELOG.md) is available in the archive as well as in the repository.

 

Since we use git, there are many ways to get the details in many formats. 

One of our preferred ways is to use a script written by the author of the Ray assembler: Sébastien Boisvert, 

which lists the commits by tag and author: 

https://raw.github.com/sebhtml/ray/master/scripts/dump-ChangeLog.sh 

--

Mareike Janiak

Bioinformatics Analyst - Technical Development

Canadian Centre for Computational Genomics (C3G)