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Welcome to the
GenPipes
(C3G analysis pipelines) mailing list.
Here you can find questions and answers or comments on our pipeline suite.
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Mareike Janiak
10/9/25
Release of GenPipes 6.1.0
A new release of GenPipes, 6.1.0 is now available. What's new? ========== This is a medium
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Release of GenPipes 6.1.0
A new release of GenPipes, 6.1.0 is now available. What's new? ========== This is a medium
10/9/25
Mareike Janiak
4/16/25
Release of GenPipes 6.0.0
A new release of GenPipes, 6.0.0 is now available. What's new? ========== This is a major release
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Release of GenPipes 6.0.0
A new release of GenPipes, 6.0.0 is now available. What's new? ========== This is a major release
4/16/25
Mareike Janiak
2/3/25
Release of GenPipes 5.1.0
A new release of GenPipes, 5.1.0 is now available. What's new? ========== This is a bug-fix
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Release of GenPipes 5.1.0
A new release of GenPipes, 5.1.0 is now available. What's new? ========== This is a bug-fix
2/3/25
Mareike Janiak
12/9/24
Release of GenPipes 5.0.3
A new release of GenPipes, 5.0.3 is now available. What's new? ========== This is a bug-fix minor
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Release of GenPipes 5.0.3
A new release of GenPipes, 5.0.3 is now available. What's new? ========== This is a bug-fix minor
12/9/24
Mareike Janiak
12/5/24
Release of GenPipes 5.0.2
A new release of GenPipes, 5.0.2 is now available. What's new? ========== This is a bug-fix minor
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Release of GenPipes 5.0.2
A new release of GenPipes, 5.0.2 is now available. What's new? ========== This is a bug-fix minor
12/5/24
Mareike Janiak
9/24/24
Release of GenPipes 5.0.1
A new release of GenPipes, 5.0.1 is now available. What's new? ========== This is a major release
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Release of GenPipes 5.0.1
A new release of GenPipes, 5.0.1 is now available. What's new? ========== This is a major release
9/24/24
Mareike Janiak
5/21/24
Release of GenPipes 4.6.1
A new release of GenPipes, 4.6.1 is now available. What's new? ========== This is a bug-fix minor
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Release of GenPipes 4.6.1
A new release of GenPipes, 4.6.1 is now available. What's new? ========== This is a bug-fix minor
5/21/24
Mareike Janiak
5/1/24
Release of GenPipes 4.6.0
A new release of GenPipes, 4.6.0 is now available. What's new? ========== This is a medium
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Release of GenPipes 4.6.0
A new release of GenPipes, 4.6.0 is now available. What's new? ========== This is a medium
5/1/24
Mareike Janiak
2/9/24
Release of GenPipes 4.5.0
A new release of GenPipes, 4.5.0 is now available. What's new? ========== This is a medium
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Release of GenPipes 4.5.0
A new release of GenPipes, 4.5.0 is now available. What's new? ========== This is a medium
2/9/24
Mareike Janiak
1/8/24
Release of GenPipes 4.4.5
A new release of GenPipes, 4.4.5 is now available. What's new? ========== This is a bug-fix minor
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Release of GenPipes 4.4.5
A new release of GenPipes, 4.4.5 is now available. What's new? ========== This is a bug-fix minor
1/8/24
Mareike Janiak
9/11/23
Release of GenPipes 4.4.4
A new release of the GenPipes, 4.4.4 is now available. What's new? ========== This is a bug-fix
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Release of GenPipes 4.4.4
A new release of the GenPipes, 4.4.4 is now available. What's new? ========== This is a bug-fix
9/11/23
Mareike Janiak
8/24/23
Release of GenPipes 4.4.3
A new release of the GenPipes, 4.4.3 is now available. What's new? ========== This is a bug-fix
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Release of GenPipes 4.4.3
A new release of the GenPipes, 4.4.3 is now available. What's new? ========== This is a bug-fix
8/24/23
Mareike Janiak
6/21/23
Release of GenPipes 4.4.2
A new release of the GenPipes, 4.4.2 is now available. What's new? ========== This is a bug-fix
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Release of GenPipes 4.4.2
A new release of the GenPipes, 4.4.2 is now available. What's new? ========== This is a bug-fix
6/21/23
Nawal Chehab
,
Alain Pacis
2
5/11/23
ChIP model peak and change mfold
Hi Nawal, Thanks for your message. Would it be possible to send me a UCSC track link (if available)
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ChIP model peak and change mfold
Hi Nawal, Thanks for your message. Would it be possible to send me a UCSC track link (if available)
5/11/23
James Saliba
, …
José Héctor Gálvez
9
4/29/23
ChIP DiffBind
Hi Jose, Thank you for your detailed response, it was very illuminating! Best, James On Thursday,
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ChIP DiffBind
Hi Jose, Thank you for your detailed response, it was very illuminating! Best, James On Thursday,
4/29/23
James Saliba
,
Mareike Janiak
3
4/25/23
blacklisted chip regions
Sounds great thanks! On Tuesday, April 25, 2023 at 10:10:47 AM UTC-4 mareike...@computationalgenomics
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blacklisted chip regions
Sounds great thanks! On Tuesday, April 25, 2023 at 10:10:47 AM UTC-4 mareike...@computationalgenomics
4/25/23
edouard.henrion
3/14/23
Release of GenPipes 4.4.1
A new release of the GenPipes, 4.4.1 is now available. What's new? ========== This is a bug-fix
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Release of GenPipes 4.4.1
A new release of the GenPipes, 4.4.1 is now available. What's new? ========== This is a bug-fix
3/14/23
edouard.henrion
3/9/23
Release of GenPipes 4.4.0
A new release of the GenPipes, 4.4.0 is now available. What's new? ========== This is a medium
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Release of GenPipes 4.4.0
A new release of the GenPipes, 4.4.0 is now available. What's new? ========== This is a medium
3/9/23
edouard.henrion
12/8/22
Release of GenPipes 4.3.2
What's new? ========== This release is mainly a bug-fix release : * Tumor Pair : fixed '
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Release of GenPipes 4.3.2
What's new? ========== This release is mainly a bug-fix release : * Tumor Pair : fixed '
12/8/22
Shraddha Pai
, …
edouard.henrion
6
10/26/22
GenPipes on Graham: no module named configparser
Thanks Edouard, that worked. The pipeline ran from end to end and I am able to see the output files.
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GenPipes on Graham: no module named configparser
Thanks Edouard, that worked. The pipeline ran from end to end and I am able to see the output files.
10/26/22
edouard.henrion
, …
Shraddha Pai
4
10/18/22
Release of GenPipes 4.3.1
Hi Edouard, Great, I see it now. Thank you also for the documentation website. I will follow the
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Release of GenPipes 4.3.1
Hi Edouard, Great, I see it now. Thank you also for the documentation website. I will follow the
10/18/22
kathlee...@gmail.com
,
edouard.henrion
2
10/7/22
Compute Canada GenPipes Version
Hi Kathleen, Yes GenPipes 4.3.1 is out ! Sorry I didn't post the message in the forum, by mistake
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Compute Canada GenPipes Version
Hi Kathleen, Yes GenPipes 4.3.1 is out ! Sorry I didn't post the message in the forum, by mistake
10/7/22
Michele Tinti
,
José Héctor Gálvez
2
9/30/22
tumor pair pipline question
Hello Michele, While it is indeed possible to use the pipeline for the application you describe, it
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tumor pair pipline question
Hello Michele, While it is indeed possible to use the pipeline for the application you describe, it
9/30/22
edouard.henrion
6/15/22
GenPipes release 4.3.0
A new release of the GenPipes, 4.3.0 is now available. What's new? ========== * MethylSeq :
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GenPipes release 4.3.0
A new release of the GenPipes, 4.3.0 is now available. What's new? ========== * MethylSeq :
6/15/22
edouard.henrion
6/2/22
GenPipes release 4.2.0
A new release of the GenPipes, 4.2.0 is now available. What's new? ========== * New ini file
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GenPipes release 4.2.0
A new release of the GenPipes, 4.2.0 is now available. What's new? ========== * New ini file
6/2/22
José Héctor Gálvez
5/30/22
GenPipes User Survey
Hello GenPipes users, As part of our planning for future development, we would appreciate it if you
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GenPipes User Survey
Hello GenPipes users, As part of our planning for future development, we would appreciate it if you
5/30/22
Marco
,
GenPipes
3
2/19/22
genpipes/4.1.2 Error
Hello ... Thanks for that suggestion. It worked, one step further. But now I am getting this error ..
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genpipes/4.1.2 Error
Hello ... Thanks for that suggestion. It worked, one step further. But now I am getting this error ..
2/19/22
Neha Joshi
,
Pubudu Nawarathna
2
10/26/21
creating a custom reference.ini
Hi, What is the genome you want to use? First we have to check whether the genome is already stored
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creating a custom reference.ini
Hi, What is the genome you want to use? First we have to check whether the genome is already stored
10/26/21
Deepak Saini
10/1/21
Incompatible genomes for RNA-seq
Hello, I am currently trying to run the genpipes RNA-seq pipeline (version 3.6.0) on the beluga
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Incompatible genomes for RNA-seq
Hello, I am currently trying to run the genpipes RNA-seq pipeline (version 3.6.0) on the beluga
10/1/21
Kathleen Klein
5/25/21
skewer
Good morning, I see that you have switched to skewer in your DNA seq pipeline. Can you help me
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skewer
Good morning, I see that you have switched to skewer in your DNA seq pipeline. Can you help me
5/25/21