Version 0.75 Released!

[Felipe Albrecht]

From the wikipage: http://genoogle.pih.bio.br/wiki/Release-0.75

Genoogle BETA 0.75

Date: 12/09/2009.

Download link: http://svn.pih.bio.br/genoogle-packages/releases/0.75/

Main changes:

Better start up scripts.

Environment variables.

Removed biojava dependency.

More information at the formated data bank, so, It is necessary to reformat the data bank!

Users changes:

Now it is easier to run Genoogle as Apache Tomcat container. Genoogle uses the environment variable $GENOOGLE_HOME to get Genoogle directory, turning unnecessary to create a link of the conf/ and /files directory inside the Tomcat Apache bin/ directory. The best way to use $GENOOGLE_HOME environment variable is to set it at the user's bash configuration file: .bashrc. By example, I have at my .bashrc the following line:

  export GENOOGLE_HOME=/home/albrecht/genoogle

The /home/albrecht/genoogle contains all Genoogle files and directory, especially conf/ and files/, which will be required to run as container at Apache Tomcat. For more information on the environment variables, please, check the .sh files:

  format_db.sh  run_console.sh  run_standalone_web.sh run_web.sh

Biojava package and its dependencies was removed. All necessary classes was reimplemented. It means more testability and performance for Genoogle. Thank you for all Biojava developers! Biojava was really useful during all this time.

Genoogle data bank now stores more informations about the formatted sequences. So, please, removed yours formatted data banks and format them agaim. If you do not do it, Genoogle will not work well, and we do no want it.

It is all. Please use this Group to send questions, suggestions and bugs reports.

Felipe Albrecht