Re: [GenMAPP] GenMapp: the raw data conversion

[GenMAPP]

Hi Ana,

The file organization looks fine, however, the way your
file is it will create a separate MAPP for each line
(otherwise the last column would correspond to a single
consistent name). I imported your relationships in
MAPPBuilder and it worked fine.

My guess is that it is actually your saved file format.
From Excel on a PC, you should save as:
Text (Tab delimited) (*.txt)

See attached.
Best,
Nathan



On Mon, 16 Jul 2012 03:20:32 -0700 (PDT)
ana atja <saj...@yahoo.com> wrote:
>
>
> Hello,
>
> I downloaded GenMapp and I only want to mapp my dataset
>of proteins against
> specific pathways. (to see what proteins were identified
>in specific
> pathways). I also want to see subcellular localization
>of proteins dataset.
> My problem is: when I am using the MappBuilder I cannot
>convert my raw
> dataset. I suppose I do not need to use expression
>dataset manager because
> I do not have: differential express proteins in two
>different conditions
>
> This is the format of my excel file:
>
> GeneID
>
> SystemCode
>
> Label
>
> Head
>
> Remarks
>
> MAPPName
>
> 11657
>
> L
>
> Q546G4_MOUSE
>
> Q546G4_MOUSE
>
> 11657
>
> L
>
> ALBU_MOUSE
>
> ALBU_MOUSE
>
> 14104
>
> L
>
>FAS_MOUSE
>
> FAS_MOUSE
>
> 22041
>
> L
>
> TRFE_MOUSE
>
> TRFE_MOUSE
>
> 22352
>
> L
>
> Q5FWJ3_MOUSE
>
> Q5FWJ3_MOUSE
>
> 22352
>
> L
>
> VIME_MOUSE
>
> VIME_MOUSE
>
> 1.01E+08
>
> L
>
> A8DUK4_MOUSE
>
> A8DUK4_MOUSE
>
> 1.01E+08
>
> L
>
> HBB1_MOUSE
>
> HBB1_MOUSE
>
> 15129
>
> L
>
> A8DUK4_MOUSE
>
> A8DUK4_MOUSE
>
> 15129
>
> L
>
> HBB1_MOUSE
>
> HBB1_MOUSE
>
> 103968
>
> L
>
> PLIN1_MOUSE
>
> PLIN1_MOUSE
>
> 12842
>
> L
>
> CO1A1_MOUSE
>
> CO1A1_MOUSE
>
> 20742
>
> L
>
> Q3TZN6_MOUSE
>
> Q3TZN6_MOUSE
>
> 20742
>
> L
>
> SPTB2_MOUSE
>
> SPTB2_MOUSE
>
> 20742
>
> L
>
> Q8BQ35_MOUSE
>
> Q8BQ35_MOUSE
>
>
>
> I always see this message:
>
> �The columns headings are inccorect. Please check your
>text file�.�
>
>
>
> Thank you for your help,
>
> Ana
>
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