Branch length estimation on a fixed topology with SpeciesRax

[Yasamin Tabatabaee]

Dear Benoit,

Is it possible to estimate branch lengths on a fixed input species tree topology with SpeciesRax? Similar to how RAxML optimizes branch lengths on a fixed topology with the option -f e.

Thanks,

Yasamin

[Benoit Morel]

Dear Yasamin,

I apologize for the very late reply... In case you still need the answer, GeneRax/SpeciesRax provides this option to estimate the branche lengths:

--si-estimate-bl

It is described on the following page GeneRax · BenoitMorel/GeneRax Wiki (github.com)  as well as in the SpeciesRax manuscript

Best,

Benoit

--
You received this message because you are subscribed to the Google Groups "GeneRax" group.
To unsubscribe from this group and stop receiving emails from it, send an email to generaxusers...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/generaxusers/cb2928af-6044-4aba-a030-5be6acb65758n%40googlegroups.com.