GeneRax

Dear Users of our SW tools, Do you want to spend time in the French Alps and talk about Machine

Dear Benoit, That's right! I just checked the stats.txt file of each gene family and they are all

Salut Muhammad, Thanks for your kind feedback :-) This error message often occures when one uses a

Dear Users of our Software Tools, Do you fancy spending some days in the French Alps in December and

Hi Kyle, No there isn't any code that can do the conversion. I think it would be faster to use

Hi Brenda, It can be a bug of the version you are using. As a workaround you can try out the bug-

Hi Ankit, I'm almost sure that the error is caused by some problem with data, not by a bug of

Dear Ankit Thakur, Unfortunately there is no good answer for this question. The "best"

Hi Grégoire, I assume that you are using AleRax, not GeneRax For each family, AleRax samples n (100

Dear Users of our tools, The second edition of our LEGEND conference on Machine Learning for

Hi Saioa, Sorry for the late reply, I have left academia and have less time to support the tools We

Hello, Each of the 100 reconciliation files is one sample drawn randomly from the reconciliation

Hi Stefan, Thank you for the quick and thoughtful response. Indeed, I overlooked that gene trees with

Hi Varada, "It again failed after producing 5354 reconciliations but did not produce any empty

Hi! Yes, this is a good idea. The highway inference is still in active development and things might

Dear Users of our software tools, Applications are still open for the 2025 school on computational

Dear Users of our software tools, Applications are still open for the 2025 school on computational

Hi Héloïse, If you want to use all isolates, I would rather pick the first strategy, because GeneRax

Dear Yasamin, I apologize for the very late reply... In case you still need the answer, GeneRax/

Dear Users of our software tools, Registrations are open for the 2025 school on computational

Dear Users of our software tools, Registrations are open for the 2025 school on computational

Hi Sawsan, I guess it's not surprising because 400 taxa is quite high already. But for the

Hi Benoit, There are 2 major bugs in AleRax that went unnoticed throughout the recent commits: 1. The

Hello, I think it's because you only specify the species tree but no gene family file (with

Hi Gaëlle, Thanks for your question. This question goes out of the scope of my personal expertise (I

Hello, - That's the number of events. Since AleRax samples the reconciliations several times, the

Thanks, Stepan--your reformatted tree seems to have solved that issue. Re: sampling, this is a toy

Hi Stepan, Thank you for the investigation. I'll try to fix this, but can't guarantee when I

Hello, I think the tree is unrooted. You need to specify a rooted tree Best, Benoit Le dim. 2 juin

Okay, no worries. Thank you for your answer. Best, Alex. Libre de virus.www.avg.com On Fri, May 10,