GeneRax

<Head-slap> That's the problem. Generax seems to be working now. Thank you, I thought I

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Anyone interested? On Thu, Nov 27, 2025, 5:20 AM Kimberlee Smith <kimberle...@gmail.com>

Juan, That's great! However, not using MPI comes at the cost of inability to use the tool for

Thanks for your answer. I was confused as the B values didn't correspond to any previous values.

Hello, I encountered the same error while using both the Conda-based and compilation-based

Dear Users of our Tools, Please consider joining us in Crete in May 2026 for the annual instance of

Dear Users of our Tools, Please consider joining us in Crete in May 2026 for the annual instance of

Hi Rachel, Thanks for your message. Could you please try to reproduce the issue with a very small

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Hello Takahashi, Sorry for the late answer :) You are right, you can use the summary file, it should

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Dear Benoit, That's right! I just checked the stats.txt file of each gene family and they are all

Salut Muhammad, Thanks for your kind feedback :-) This error message often occures when one uses a

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Hi Kyle, No there isn't any code that can do the conversion. I think it would be faster to use

Hi Brenda, It can be a bug of the version you are using. As a workaround you can try out the bug-

Hi Ankit, I'm almost sure that the error is caused by some problem with data, not by a bug of

Dear Ankit Thakur, Unfortunately there is no good answer for this question. The "best"

Hi Grégoire, I assume that you are using AleRax, not GeneRax For each family, AleRax samples n (100

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Hi Saioa, Sorry for the late reply, I have left academia and have less time to support the tools We

Hello, Each of the 100 reconciliation files is one sample drawn randomly from the reconciliation

Hi Stefan, Thank you for the quick and thoughtful response. Indeed, I overlooked that gene trees with

Hi Varada, "It again failed after producing 5354 reconciliations but did not produce any empty

Hi! Yes, this is a good idea. The highway inference is still in active development and things might

Dear Users of our software tools, Applications are still open for the 2025 school on computational

Dear Users of our software tools, Applications are still open for the 2025 school on computational

Hi Héloïse, If you want to use all isolates, I would rather pick the first strategy, because GeneRax