GenePattern Help Forum

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Welcome to the GenePattern help forum. This is a place to get help from GenePattern team members and fellow GenePattern users and also a place to post anything you've found useful in using GenePattern.

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Happy posting!

-The GenePattern team

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aliciar, D R Mani4

11/19/18

Q&A

PTM-SEA error

Hello, The error was due to incorrect formatting of the input dataset -- the file contains blank

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ssGSEA

Q&A

PTM-SEA error

Hello, The error was due to incorrect formatting of the input dataset -- the file contains blank

11/19/18

dl...@foghorntx.com, Edwin Juarez3

8/7/18

Q&A

trying to run ssGSEAProjection can't get gct formatted correctly

Thank you Edwin - that did it! I reformatted to GCT 1.2 and it worked fine. On Monday, August 6, 2018

unread,

ssGSEA

Q&A

trying to run ssGSEAProjection can't get gct formatted correctly

Thank you Edwin - that did it! I reformatted to GCT 1.2 and it worked fine. On Monday, August 6, 2018

8/7/18

AKumar, Barbara Hill2

11/17/17

Q&A

SS-GSEA

Hello , You might try the GSEALeadingEdgeViewer. Note that you will also need to use the Visualizer

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ssGSEA

Q&A

SS-GSEA

Hello , You might try the GSEALeadingEdgeViewer. Note that you will also need to use the Visualizer

11/17/17

AKumar, Barbara Hill3

11/14/17

Q&A

ssGSEA - combine.add option

Thank you Ms. Hill. I want to use the combine.add option. It worked when I used the UniquifyLabels

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ssGSEA

Q&A

ssGSEA - combine.add option

Thank you Ms. Hill. I want to use the combine.add option. It worked when I used the UniquifyLabels

11/14/17

Carlos Biagi Jr, David Eby2

11/8/17

Q&A

ssGSEA Score

Hi Carlos, I reached out to the original author of the ssGSEA method. Here is his answer: The

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Hi Carlos, I reached out to the original author of the ssGSEA method. Here is his answer: The

11/8/17