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GenePattern Help Forum

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Welcome to the GenePattern help forum. This is a place to get help from GenePattern team members and fellow GenePattern users and also a place to post anything you've found useful in using GenePattern.

More information about GenePattern can be found at https://genepattern.org, where you can also sign up to follow us on Facebook and Twitter.

Happy posting!

-The GenePattern team

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Yongchao Dou, Barbara Hill2

2/4/19

GenePattern cloud error

Hello, My sincere apologies for taking so long to respond. A new version of MutSigCV has been

unread,

GenePattern cloud error

Hello, My sincere apologies for taking so long to respond. A new version of MutSigCV has been

2/4/19

Shixiang Wang, Barbara Hill2

2/4/19

gp_MutSigCV: Permission denied

Hello Shixiang, My sincere apologies for having not responded sooner. An updated version of MutSigCV

unread,

gp_MutSigCV: Permission denied

Hello Shixiang, My sincere apologies for having not responded sooner. An updated version of MutSigCV

2/4/19

Théo Hirsch, Barbara Hill2

11/8/18

Error while using MutSigCV on the new cloud server

Hello, Thank you for bringing this to our attention. This module needs to be updated to run in Docker

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Error while using MutSigCV on the new cloud server

Hello, Thank you for bringing this to our attention. This module needs to be updated to run in Docker

11/8/18

Xavier de luca, Barbara Hill2

11/8/18

Error attempting to run MutSigCV on GenePattern

Hello, Can you provide your job id? This will help to determine all the details of how your job was

unread,locked,

Error attempting to run MutSigCV on GenePattern

Hello, Can you provide your job id? This will help to determine all the details of how your job was

11/8/18

6279...@qq.com, Barbara Hill2

10/19/18

No mutation left in MutSigCV

Hello Apologies for the delay in responding. Some members of the team have been out of the office.

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No mutation left in MutSigCV

Hello Apologies for the delay in responding. Some members of the team have been out of the office.

10/19/18

Steve L, … tingting gao7

7/8/20

Not enough mutations to analyze?

Hello Steve, How are you? Have you solved this problem? I have the same probelm with you. Can you

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Not enough mutations to analyze?

Hello Steve, How are you? Have you solved this problem? I have the same probelm with you. Can you

7/8/20

ybx523...@gmail.com, Barbara Hill3

7/24/18

how can I get these files about MutSigCV ? like chr_files_hg19.zip mutation_type_dictionary_file.txt exome_full192.coverage.txt.zip gene.covariates.

Hello, You should be able to access them by appending the file names to the end of this URL: https://

unread,

how can I get these files about MutSigCV ? like chr_files_hg19.zip mutation_type_dictionary_file.txt exome_full192.coverage.txt.zip gene.covariates.

Hello, You should be able to access them by appending the file names to the end of this URL: https://

7/24/18

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