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GenePattern Help Forum

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Welcome to the GenePattern help forum. This is a place to get help from GenePattern team members and fellow GenePattern users and also a place to post anything you've found useful in using GenePattern.

More information about GenePattern can be found at https://genepattern.org, where you can also sign up to follow us on Facebook and Twitter.

Happy posting!

-The GenePattern team

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David Lahr, … Ted Liefeld8

5/4/20

specify job memory from python API?

Thank you Ted, that's great to hear. On Mon, May 4, 2020 at 7:12 PM Ted Liefeld <liefeld@

unread,

specify job memory from python API?

Thank you Ted, that's great to hear. On Mon, May 4, 2020 at 7:12 PM Ted Liefeld <liefeld@

5/4/20

Domenico Somma, Anthony Castanza2

12/10/19

RNAseq rnk file return "A 'chip.platform.file' must be provided for collapse/remap" Error

Hi, To align with changes that we implemented in GSEA Desktop Preranked, version 7 of the module

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RNAseq rnk file return "A 'chip.platform.file' must be provided for collapse/remap" Error

Hi, To align with changes that we implemented in GSEA Desktop Preranked, version 7 of the module

12/10/19

dlahr.fo...@gmail.com, Barbara Hill4

3/29/19

Error when running GSEAPreranked

Glad that worked! We'll keep an eye on resources usage and see if that should generally be set

unread,

Error when running GSEAPreranked

Glad that worked! We'll keep an eye on resources usage and see if that should generally be set

3/29/19

2/4/19

Unexpected file transfer error when running GSEA on public server

Please respond with the following information as applicable: Complete description of the problem (ie

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Unexpected file transfer error when running GSEA on public server

Please respond with the following information as applicable: Complete description of the problem (ie

2/4/19

Viktor, David Eby2

1/29/19

How to get a timestamp for old GenePattern GSEA result?

Hi Viktor, I posted an answer to your question over on the GSEA forum: https://groups.google.com/

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How to get a timestamp for old GenePattern GSEA result?

Hi Viktor, I posted an answer to your question over on the GSEA forum: https://groups.google.com/

1/29/19

GenePattern Help Forum, Johanna Daily2

2/5/19

What does this GSEA error mean? "GeneSets should have unique names"

thanks, it does seem that when I use a different dataset results are provided thank you! johanna On

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What does this GSEA error mean? "GeneSets should have unique names"

thanks, it does seem that when I use a different dataset results are provided thank you! johanna On

2/5/19

Matthew Cserhati, Barbara Hill2

11/20/18

GSEA not working

Hello Matthew, Both of the jobs you cited seem to have been deleted. Were you able to resolve your

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GSEA not working

Hello Matthew, Both of the jobs you cited seem to have been deleted. Were you able to resolve your

11/20/18

Carlos Biagi Jr, David Eby2

11/8/17

Hi Carlos, I reached out to the original author of the ssGSEA method. Here is his answer: The

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Hi Carlos, I reached out to the original author of the ssGSEA method. Here is his answer: The

11/8/17

Candice, David Eby3

10/20/17

GSEA job errors

Thank you, this fixed my problem! On Friday, October 20, 2017 at 2:13:31 AM UTC-7, David Eby wrote:

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GSEA job errors

Thank you, this fixed my problem! On Friday, October 20, 2017 at 2:13:31 AM UTC-7, David Eby wrote:

10/20/17

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