incorrect number of data points error

[Wayne]

Dear colleagues - i am using DeSeq2 cloud version for the first time and getting this error:

The downloaded source packages are in '/tmp/RtmpkZVMxV/downloaded_packages' Installing package into '/usr/local/lib/R/site-library' (as 'lib' is unspecified) Warning message: package 'optparse' is not available (for R version 3.3.2) Error in read.cls(opts$cls.file) : Incorrect number of data points Execution halted

i have checked the # of samples and # rows in the gct file, and the parameters in the cls file, and it is perfect. i did do pre-processing on the gct file and it found some duplicates just an excel-date problem. i edited them and the pre-processing went through. then used that file to try deseq2 and got the error above.

any ideas?

thanks!

[Wayne]

ok i figured it out.  basically should let the "preprocess and utilities" make the .cls file.  making it manually seems not to work (at least not for me).  phew...